Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HLA-DMBP28068 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
HLA-DMBP28068 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.99■□□□□ 0.47
HLA-DMBP28068 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DMBP28068 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HLA-DMBP28068 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.98■□□□□ 0.47
HLA-DMBP28068 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HLA-DMBP28068 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.98■□□□□ 0.47
HLA-DMBP28068 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DMBP28068 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DMBP28068 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DMBP28068 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DMBP28068 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HLA-DMBP28068 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HLA-DMBP28068 RARRES2P2-201ENST00000394842 485 ntBASIC17.97■□□□□ 0.47
HLA-DMBP28068 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DMBP28068 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DMBP28068 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DMBP28068 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HLA-DMBP28068 RNF126P1-201ENST00000567452 1320 ntBASIC17.97■□□□□ 0.47
HLA-DMBP28068 SMPD5-203ENST00000639008 1464 ntBASIC17.96■□□□□ 0.47
HLA-DMBP28068 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DMBP28068 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DMBP28068 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DMBP28068 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
HLA-DMBP28068 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DMBP28068 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DMBP28068 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
HLA-DMBP28068 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 AC092296.2-201ENST00000589470 999 ntBASIC17.95■□□□□ 0.46
HLA-DMBP28068 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DMBP28068 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 LINC01124-201ENST00000409786 2117 ntBASIC17.95■□□□□ 0.46
HLA-DMBP28068 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DMBP28068 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HLA-DMBP28068 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
HLA-DMBP28068 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HLA-DMBP28068 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.94■□□□□ 0.46
HLA-DMBP28068 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC17.94■□□□□ 0.46
HLA-DMBP28068 MIR3960-201ENST00000583311 91 ntBASIC17.94■□□□□ 0.46
HLA-DMBP28068 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.94■□□□□ 0.46
HLA-DMBP28068 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HLA-DMBP28068 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HLA-DMBP28068 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.94■□□□□ 0.46
HLA-DMBP28068 TMEM202-AS1-202ENST00000565181 2325 ntBASIC17.93■□□□□ 0.46
HLA-DMBP28068 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HLA-DMBP28068 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
HLA-DMBP28068 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.93■□□□□ 0.46
HLA-DMBP28068 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HLA-DMBP28068 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HLA-DMBP28068 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC17.93■□□□□ 0.46
HLA-DMBP28068 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HLA-DMBP28068 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HLA-DMBP28068 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC17.92■□□□□ 0.46
HLA-DMBP28068 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HLA-DMBP28068 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DMBP28068 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DMBP28068 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.91■□□□□ 0.46
HLA-DMBP28068 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HLA-DMBP28068 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DMBP28068 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DMBP28068 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HLA-DMBP28068 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DMBP28068 AP003733.4-201ENST00000623785 1697 ntBASIC17.9■□□□□ 0.46
HLA-DMBP28068 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DMBP28068 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms