Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 EI24-212ENST00000615917 1407 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGB3O15347 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGB3O15347 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
HMGB3O15347 WHAMMP3-201ENST00000611636 1609 ntBASIC19.04■□□□□ 0.64
HMGB3O15347 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB3O15347 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.04■□□□□ 0.64
HMGB3O15347 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGB3O15347 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGB3O15347 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
HMGB3O15347 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGB3O15347 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGB3O15347 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGB3O15347 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB3O15347 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB3O15347 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGB3O15347 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGB3O15347 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HMGB3O15347 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HMGB3O15347 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
HMGB3O15347 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HMGB3O15347 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HMGB3O15347 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGB3O15347 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGB3O15347 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGB3O15347 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGB3O15347 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HMGB3O15347 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB3O15347 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB3O15347 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
HMGB3O15347 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGB3O15347 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB3O15347 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB3O15347 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HMGB3O15347 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB3O15347 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB3O15347 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
HMGB3O15347 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB3O15347 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HMGB3O15347 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB3O15347 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB3O15347 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB3O15347 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB3O15347 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
HMGB3O15347 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB3O15347 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB3O15347 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HMGB3O15347 AC136428.2-201ENST00000563187 214 ntBASIC18.97■□□□□ 0.63
HMGB3O15347 MIR6090-201ENST00000622481 60 ntBASIC18.97■□□□□ 0.63
HMGB3O15347 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB3O15347 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB3O15347 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.96■□□□□ 0.63
HMGB3O15347 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB3O15347 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HMGB3O15347 AC108673.1-201ENST00000510422 1159 ntBASIC18.96■□□□□ 0.63
HMGB3O15347 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB3O15347 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
HMGB3O15347 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB3O15347 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB3O15347 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB3O15347 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB3O15347 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB3O15347 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB3O15347 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB3O15347 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HMGB3O15347 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB3O15347 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB3O15347 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB3O15347 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB3O15347 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB3O15347 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB3O15347 AC097358.2-201ENST00000607541 1159 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms