Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
USP42Q9H9J4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP42Q9H9J4 MIR638-201ENST00000385237 100 ntBASIC30.73■■■□□ 2.51
USP42Q9H9J4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
USP42Q9H9J4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.73■■■□□ 2.51
USP42Q9H9J4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.73■■■□□ 2.51
USP42Q9H9J4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP42Q9H9J4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP42Q9H9J4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
USP42Q9H9J4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP42Q9H9J4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP42Q9H9J4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
USP42Q9H9J4 AC021242.3-201ENST00000607598 1377 ntBASIC30.7■■■□□ 2.51
USP42Q9H9J4 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
USP42Q9H9J4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP42Q9H9J4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP42Q9H9J4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USP42Q9H9J4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP42Q9H9J4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.69■■■□□ 2.5
USP42Q9H9J4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.68■■■□□ 2.5
USP42Q9H9J4 AL449106.1-201ENST00000608517 1980 ntBASIC30.68■■■□□ 2.5
USP42Q9H9J4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP42Q9H9J4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP42Q9H9J4 TSPY9P-201ENST00000440215 945 ntBASIC30.67■■■□□ 2.5
USP42Q9H9J4 TSPY11P-201ENST00000442607 1045 ntBASIC30.67■■■□□ 2.5
USP42Q9H9J4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP42Q9H9J4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 AC120024.1-201ENST00000562672 995 ntBASIC30.66■■■□□ 2.5
USP42Q9H9J4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
USP42Q9H9J4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.65■■■□□ 2.5
USP42Q9H9J4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.64■■■□□ 2.5
USP42Q9H9J4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.64■■■□□ 2.5
USP42Q9H9J4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 AC131281.2-201ENST00000520478 145 ntBASIC30.62■■■□□ 2.49
USP42Q9H9J4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP42Q9H9J4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP42Q9H9J4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.59■■■□□ 2.49
USP42Q9H9J4 AL139246.5-201ENST00000606645 996 ntBASIC30.59■■■□□ 2.49
USP42Q9H9J4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.59■■■□□ 2.49
USP42Q9H9J4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.57■■■□□ 2.48
USP42Q9H9J4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 AC092028.1-203ENST00000608262 953 ntBASIC30.57■■■□□ 2.48
USP42Q9H9J4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
USP42Q9H9J4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms