Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.03■□□□□ 0.8
NKX6-3A6NJ46 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NKX6-3A6NJ46 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NKX6-3A6NJ46 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
NKX6-3A6NJ46 MIR6765-201ENST00000614092 87 ntBASIC20.02■□□□□ 0.8
NKX6-3A6NJ46 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.02■□□□□ 0.8
NKX6-3A6NJ46 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NKX6-3A6NJ46 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
NKX6-3A6NJ46 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NKX6-3A6NJ46 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NKX6-3A6NJ46 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.01■□□□□ 0.79
NKX6-3A6NJ46 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.01■□□□□ 0.79
NKX6-3A6NJ46 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX6-3A6NJ46 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20■□□□□ 0.79
NKX6-3A6NJ46 AC129492.7-201ENST00000622992 756 ntBASIC20■□□□□ 0.79
NKX6-3A6NJ46 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NKX6-3A6NJ46 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20■□□□□ 0.79
NKX6-3A6NJ46 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.79
NKX6-3A6NJ46 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NKX6-3A6NJ46 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20■□□□□ 0.79
NKX6-3A6NJ46 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 DUX4L9-201ENST00000449051 1259 ntBASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.99■□□□□ 0.79
NKX6-3A6NJ46 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.98■□□□□ 0.79
NKX6-3A6NJ46 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NKX6-3A6NJ46 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 AC096887.2-201ENST00000623443 1957 ntBASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 SPCS2P3-201ENST00000500401 656 ntBASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 AC012354.3-201ENST00000623734 483 ntBASIC19.96■□□□□ 0.79
NKX6-3A6NJ46 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
NKX6-3A6NJ46 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NKX6-3A6NJ46 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX6-3A6NJ46 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.94■□□□□ 0.78
NKX6-3A6NJ46 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
NKX6-3A6NJ46 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX6-3A6NJ46 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.93■□□□□ 0.78
NKX6-3A6NJ46 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX6-3A6NJ46 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 AC139795.1-202ENST00000500444 432 ntBASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 AC097639.1-201ENST00000565519 1891 ntBASIC19.92■□□□□ 0.78
NKX6-3A6NJ46 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 TSPY13P-201ENST00000338964 914 ntBASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 ATP5G2P3-201ENST00000429083 425 ntBASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 DUX4L18-201ENST00000553347 1267 ntBASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.91■□□□□ 0.78
NKX6-3A6NJ46 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 RPS2P7-201ENST00000447334 885 ntBASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
NKX6-3A6NJ46 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms