Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HIST1H1AQ02539 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.2■□□□□ 0.5
HIST1H1AQ02539 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIST1H1AQ02539 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.2■□□□□ 0.5
HIST1H1AQ02539 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIST1H1AQ02539 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIST1H1AQ02539 AC126177.7-201ENST00000547904 679 ntBASIC18.19■□□□□ 0.5
HIST1H1AQ02539 AC016575.1-201ENST00000607026 382 ntBASIC18.19■□□□□ 0.5
HIST1H1AQ02539 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 METRNL-202ENST00000570778 967 ntTSL 5 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIST1H1AQ02539 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIST1H1AQ02539 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HIST1H1AQ02539 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIST1H1AQ02539 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HIST1H1AQ02539 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HIST1H1AQ02539 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC18.16■□□□□ 0.5
HIST1H1AQ02539 ERN1-208ENST00000606895 2068 ntBASIC18.16■□□□□ 0.5
HIST1H1AQ02539 AL359504.2-201ENST00000605506 1601 ntBASIC18.16■□□□□ 0.5
HIST1H1AQ02539 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HIST1H1AQ02539 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 MIR7108-201ENST00000614319 87 ntBASIC18.15■□□□□ 0.5
HIST1H1AQ02539 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HIST1H1AQ02539 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
HIST1H1AQ02539 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.14■□□□□ 0.5
HIST1H1AQ02539 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
HIST1H1AQ02539 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 MED25-210ENST00000612854 801 ntTSL 5 BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 MED25-214ENST00000622402 642 ntTSL 5 BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.14■□□□□ 0.49
HIST1H1AQ02539 AC010501.1-201ENST00000606270 1962 ntBASIC18.13■□□□□ 0.49
HIST1H1AQ02539 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HIST1H1AQ02539 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HIST1H1AQ02539 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HIST1H1AQ02539 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HIST1H1AQ02539 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HIST1H1AQ02539 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HIST1H1AQ02539 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC18.12■□□□□ 0.49
HIST1H1AQ02539 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HIST1H1AQ02539 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.12■□□□□ 0.49
HIST1H1AQ02539 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
HIST1H1AQ02539 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 LINC00543-201ENST00000567234 1845 ntBASIC18.11■□□□□ 0.49
HIST1H1AQ02539 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HIST1H1AQ02539 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HIST1H1AQ02539 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.09■□□□□ 0.49
HIST1H1AQ02539 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms