Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.44■■□□□ 1.66
TTC28Q96AY4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
TTC28Q96AY4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC25.44■■□□□ 1.66
TTC28Q96AY4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
TTC28Q96AY4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
TTC28Q96AY4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
TTC28Q96AY4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.43■■□□□ 1.66
TTC28Q96AY4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.43■■□□□ 1.66
TTC28Q96AY4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
TTC28Q96AY4 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC25.43■■□□□ 1.66
TTC28Q96AY4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
TTC28Q96AY4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.42■■□□□ 1.66
TTC28Q96AY4 PBX2P1-201ENST00000493219 1291 ntBASIC25.42■■□□□ 1.66
TTC28Q96AY4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.42■■□□□ 1.66
TTC28Q96AY4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
TTC28Q96AY4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.41■■□□□ 1.66
TTC28Q96AY4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
TTC28Q96AY4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
TTC28Q96AY4 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC25.41■■□□□ 1.66
TTC28Q96AY4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
TTC28Q96AY4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
TTC28Q96AY4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.4■■□□□ 1.66
TTC28Q96AY4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
TTC28Q96AY4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.39■■□□□ 1.66
TTC28Q96AY4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.39■■□□□ 1.66
TTC28Q96AY4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
TTC28Q96AY4 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
TTC28Q96AY4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
TTC28Q96AY4 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC28Q96AY4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.38■■□□□ 1.65
TTC28Q96AY4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.38■■□□□ 1.65
TTC28Q96AY4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC28Q96AY4 AC105265.2-201ENST00000467189 838 ntBASIC25.38■■□□□ 1.65
TTC28Q96AY4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
TTC28Q96AY4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.37■■□□□ 1.65
TTC28Q96AY4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.37■■□□□ 1.65
TTC28Q96AY4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TTC28Q96AY4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.36■■□□□ 1.65
TTC28Q96AY4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC28Q96AY4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.36■■□□□ 1.65
TTC28Q96AY4 MIR6724-1-201ENST00000616420 92 ntBASIC25.35■■□□□ 1.65
TTC28Q96AY4 MIR6724-2-201ENST00000616483 92 ntBASIC25.35■■□□□ 1.65
TTC28Q96AY4 MIR6724-4-201ENST00000617390 92 ntBASIC25.35■■□□□ 1.65
TTC28Q96AY4 MIR6724-3-201ENST00000622482 92 ntBASIC25.35■■□□□ 1.65
TTC28Q96AY4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
TTC28Q96AY4 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.35■■□□□ 1.65
TTC28Q96AY4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC28Q96AY4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TTC28Q96AY4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TTC28Q96AY4 EDA-201ENST00000338901 1233 ntBASIC25.34■■□□□ 1.65
TTC28Q96AY4 ID1-201ENST00000376105 1233 ntBASIC25.34■■□□□ 1.65
TTC28Q96AY4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
TTC28Q96AY4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
TTC28Q96AY4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC28Q96AY4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC28Q96AY4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
TTC28Q96AY4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC28Q96AY4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
TTC28Q96AY4 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC28Q96AY4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC28Q96AY4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.32■■□□□ 1.64
TTC28Q96AY4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.31■■□□□ 1.64
TTC28Q96AY4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.31■■□□□ 1.64
TTC28Q96AY4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.31■■□□□ 1.64
TTC28Q96AY4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.31■■□□□ 1.64
TTC28Q96AY4 AC010997.5-201ENST00000609182 354 ntBASIC25.31■■□□□ 1.64
TTC28Q96AY4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
TTC28Q96AY4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC28Q96AY4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC28Q96AY4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
TTC28Q96AY4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC28Q96AY4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.3■■□□□ 1.64
TTC28Q96AY4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC28Q96AY4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
TTC28Q96AY4 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC28Q96AY4 AL355001.2-201ENST00000620617 1191 ntBASIC25.29■■□□□ 1.64
TTC28Q96AY4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.29■■□□□ 1.64
TTC28Q96AY4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
TTC28Q96AY4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
TTC28Q96AY4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
TTC28Q96AY4 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.29■■□□□ 1.64
TTC28Q96AY4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
TTC28Q96AY4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
TTC28Q96AY4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.28■■□□□ 1.64
TTC28Q96AY4 AF213884.3-201ENST00000563833 479 ntBASIC25.27■■□□□ 1.64
TTC28Q96AY4 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC25.27■■□□□ 1.64
TTC28Q96AY4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TTC28Q96AY4 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.27■■□□□ 1.64
TTC28Q96AY4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TTC28Q96AY4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC28Q96AY4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC28Q96AY4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.26■■□□□ 1.63
TTC28Q96AY4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TTC28Q96AY4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.25■■□□□ 1.63
TTC28Q96AY4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.25■■□□□ 1.63
TTC28Q96AY4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
TTC28Q96AY4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.24■■□□□ 1.63
TTC28Q96AY4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.24■■□□□ 1.63
TTC28Q96AY4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
TTC28Q96AY4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms