Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL4A4P53420 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
COL4A4P53420 MIR638-201ENST00000385237 100 ntBASIC26.36■■□□□ 1.81
COL4A4P53420 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.36■■□□□ 1.81
COL4A4P53420 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A4P53420 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.35■■□□□ 1.81
COL4A4P53420 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL4A4P53420 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A4P53420 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL4A4P53420 KRT16P3-201ENST00000439127 1283 ntBASIC26.34■■□□□ 1.81
COL4A4P53420 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
COL4A4P53420 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
COL4A4P53420 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
COL4A4P53420 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.33■■□□□ 1.8
COL4A4P53420 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A4P53420 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A4P53420 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.32■■□□□ 1.8
COL4A4P53420 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A4P53420 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A4P53420 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL4A4P53420 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
COL4A4P53420 AC142086.6-201ENST00000621154 1765 ntBASIC26.31■■□□□ 1.8
COL4A4P53420 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.31■■□□□ 1.8
COL4A4P53420 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A4P53420 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.31■■□□□ 1.8
COL4A4P53420 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.31■■□□□ 1.8
COL4A4P53420 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL4A4P53420 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
COL4A4P53420 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A4P53420 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
COL4A4P53420 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A4P53420 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A4P53420 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
COL4A4P53420 UNC93B8-201ENST00000511903 705 ntBASIC26.3■■□□□ 1.8
COL4A4P53420 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL4A4P53420 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A4P53420 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A4P53420 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.29■■□□□ 1.8
COL4A4P53420 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.29■■□□□ 1.8
COL4A4P53420 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL4A4P53420 AL359504.2-201ENST00000605506 1601 ntBASIC26.28■■□□□ 1.8
COL4A4P53420 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A4P53420 AC019171.1-201ENST00000601251 1056 ntBASIC26.28■■□□□ 1.8
COL4A4P53420 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
COL4A4P53420 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
COL4A4P53420 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.28■■□□□ 1.8
COL4A4P53420 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL4A4P53420 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL4A4P53420 AC131281.2-201ENST00000520478 145 ntBASIC26.27■■□□□ 1.8
COL4A4P53420 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A4P53420 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.26■■□□□ 1.79
COL4A4P53420 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.26■■□□□ 1.79
COL4A4P53420 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL4A4P53420 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.25■■□□□ 1.79
COL4A4P53420 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL4A4P53420 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.25■■□□□ 1.79
COL4A4P53420 LINC01003-201ENST00000564834 1764 ntBASIC26.25■■□□□ 1.79
COL4A4P53420 BX664725.1-201ENST00000438252 379 ntBASIC26.25■■□□□ 1.79
COL4A4P53420 AC087393.1-201ENST00000582896 145 ntBASIC26.25■■□□□ 1.79
COL4A4P53420 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.25■■□□□ 1.79
COL4A4P53420 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.24■■□□□ 1.79
COL4A4P53420 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A4P53420 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A4P53420 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A4P53420 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL4A4P53420 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
COL4A4P53420 PEMT-206ENST00000435340 960 ntTSL 5 BASIC26.23■■□□□ 1.79
COL4A4P53420 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.23■■□□□ 1.79
COL4A4P53420 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.22■■□□□ 1.79
COL4A4P53420 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A4P53420 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.22■■□□□ 1.79
COL4A4P53420 MIR4787-201ENST00000607364 84 ntBASIC26.22■■□□□ 1.79
COL4A4P53420 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A4P53420 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A4P53420 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A4P53420 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL4A4P53420 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.21■■□□□ 1.79
COL4A4P53420 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
COL4A4P53420 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.21■■□□□ 1.79
COL4A4P53420 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.21■■□□□ 1.79
COL4A4P53420 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL4A4P53420 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
COL4A4P53420 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.19■■□□□ 1.78
COL4A4P53420 LONRF2P2-201ENST00000439212 571 ntBASIC26.19■■□□□ 1.78
COL4A4P53420 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
COL4A4P53420 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.19■■□□□ 1.78
COL4A4P53420 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL4A4P53420 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.19■■□□□ 1.78
COL4A4P53420 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
COL4A4P53420 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A4P53420 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A4P53420 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.18■■□□□ 1.78
COL4A4P53420 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.18■■□□□ 1.78
COL4A4P53420 KRT125P-201ENST00000546827 989 ntBASIC26.18■■□□□ 1.78
COL4A4P53420 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL4A4P53420 BX255925.1-201ENST00000566954 1854 ntBASIC26.17■■□□□ 1.78
COL4A4P53420 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A4P53420 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
COL4A4P53420 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL4A4P53420 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms