Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A5A8TX70 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A5A8TX70 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A5A8TX70 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A5A8TX70 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.69■□□□□ 0.74
COL6A5A8TX70 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.69■□□□□ 0.74
COL6A5A8TX70 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL6A5A8TX70 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A5A8TX70 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 AC096631.2-201ENST00000436136 790 ntBASIC19.67■□□□□ 0.74
COL6A5A8TX70 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A5A8TX70 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A5A8TX70 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A5A8TX70 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A5A8TX70 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A5A8TX70 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A5A8TX70 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A5A8TX70 AC135279.3-201ENST00000610945 1311 ntBASIC19.66■□□□□ 0.74
COL6A5A8TX70 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A5A8TX70 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL6A5A8TX70 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL6A5A8TX70 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A5A8TX70 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL6A5A8TX70 AL136116.3-201ENST00000402907 1138 ntBASIC19.65■□□□□ 0.74
COL6A5A8TX70 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC19.65■□□□□ 0.74
COL6A5A8TX70 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A5A8TX70 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.65■□□□□ 0.74
COL6A5A8TX70 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A5A8TX70 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL6A5A8TX70 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A5A8TX70 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL6A5A8TX70 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A5A8TX70 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A5A8TX70 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A5A8TX70 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A5A8TX70 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A5A8TX70 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.63■□□□□ 0.73
COL6A5A8TX70 MIR4466-201ENST00000606121 54 ntBASIC19.63■□□□□ 0.73
COL6A5A8TX70 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.62■□□□□ 0.73
COL6A5A8TX70 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A5A8TX70 SUDS3P1-201ENST00000505831 966 ntBASIC19.62■□□□□ 0.73
COL6A5A8TX70 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A5A8TX70 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.62■□□□□ 0.73
COL6A5A8TX70 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.62■□□□□ 0.73
COL6A5A8TX70 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL6A5A8TX70 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A5A8TX70 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL6A5A8TX70 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.61■□□□□ 0.73
COL6A5A8TX70 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.61■□□□□ 0.73
COL6A5A8TX70 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
COL6A5A8TX70 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A5A8TX70 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL6A5A8TX70 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.6■□□□□ 0.73
COL6A5A8TX70 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A5A8TX70 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
COL6A5A8TX70 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A5A8TX70 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.6■□□□□ 0.73
COL6A5A8TX70 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL6A5A8TX70 MIR3960-201ENST00000583311 91 ntBASIC19.59■□□□□ 0.73
COL6A5A8TX70 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.59■□□□□ 0.73
COL6A5A8TX70 MIR3621-201ENST00000580529 85 ntBASIC19.59■□□□□ 0.73
COL6A5A8TX70 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL6A5A8TX70 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A5A8TX70 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A5A8TX70 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A5A8TX70 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.58■□□□□ 0.73
COL6A5A8TX70 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A5A8TX70 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A5A8TX70 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A5A8TX70 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
COL6A5A8TX70 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A5A8TX70 AC022616.5-201ENST00000518796 181 ntBASIC19.57■□□□□ 0.72
COL6A5A8TX70 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A5A8TX70 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A5A8TX70 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.57■□□□□ 0.72
COL6A5A8TX70 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A5A8TX70 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A5A8TX70 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A5A8TX70 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A5A8TX70 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A5A8TX70 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A5A8TX70 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A5A8TX70 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A5A8TX70 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.55■□□□□ 0.72
COL6A5A8TX70 AC087393.1-201ENST00000582896 145 ntBASIC19.55■□□□□ 0.72
COL6A5A8TX70 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A5A8TX70 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A5A8TX70 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A5A8TX70 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A5A8TX70 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.54■□□□□ 0.72
COL6A5A8TX70 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL6A5A8TX70 MEST-211ENST00000437945 1455 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A5A8TX70 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A5A8TX70 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A5A8TX70 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms