Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM3Q53GG5 AP002414.2-202ENST00000590929 1450 ntBASIC20.42■□□□□ 0.86
PDLIM3Q53GG5 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.41■□□□□ 0.86
PDLIM3Q53GG5 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDLIM3Q53GG5 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.39■□□□□ 0.86
PDLIM3Q53GG5 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM3Q53GG5 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM3Q53GG5 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDLIM3Q53GG5 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.39■□□□□ 0.85
PDLIM3Q53GG5 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.38■□□□□ 0.85
PDLIM3Q53GG5 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDLIM3Q53GG5 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDLIM3Q53GG5 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDLIM3Q53GG5 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
PDLIM3Q53GG5 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM3Q53GG5 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM3Q53GG5 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PDLIM3Q53GG5 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.36■□□□□ 0.85
PDLIM3Q53GG5 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PDLIM3Q53GG5 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM3Q53GG5 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM3Q53GG5 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM3Q53GG5 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM3Q53GG5 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM3Q53GG5 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM3Q53GG5 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM3Q53GG5 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
PDLIM3Q53GG5 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.33■□□□□ 0.85
PDLIM3Q53GG5 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
PDLIM3Q53GG5 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.33■□□□□ 0.84
PDLIM3Q53GG5 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM3Q53GG5 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 AC012354.3-201ENST00000623734 483 ntBASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM3Q53GG5 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
PDLIM3Q53GG5 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM3Q53GG5 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.31■□□□□ 0.84
PDLIM3Q53GG5 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.31■□□□□ 0.84
PDLIM3Q53GG5 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM3Q53GG5 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PDLIM3Q53GG5 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.3■□□□□ 0.84
PDLIM3Q53GG5 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.3■□□□□ 0.84
PDLIM3Q53GG5 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.3■□□□□ 0.84
PDLIM3Q53GG5 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM3Q53GG5 AC018358.1-201ENST00000631079 1402 ntBASIC20.29■□□□□ 0.84
PDLIM3Q53GG5 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.29■□□□□ 0.84
PDLIM3Q53GG5 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM3Q53GG5 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM3Q53GG5 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PDLIM3Q53GG5 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.28■□□□□ 0.84
PDLIM3Q53GG5 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM3Q53GG5 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PDLIM3Q53GG5 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
PDLIM3Q53GG5 AC019069.1-201ENST00000610008 1333 ntBASIC20.27■□□□□ 0.83
PDLIM3Q53GG5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PDLIM3Q53GG5 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.26■□□□□ 0.83
PDLIM3Q53GG5 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PDLIM3Q53GG5 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.25■□□□□ 0.83
PDLIM3Q53GG5 AC135983.2-203ENST00000454486 1613 ntBASIC20.25■□□□□ 0.83
PDLIM3Q53GG5 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.25■□□□□ 0.83
PDLIM3Q53GG5 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PDLIM3Q53GG5 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PDLIM3Q53GG5 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PDLIM3Q53GG5 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PDLIM3Q53GG5 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.24■□□□□ 0.83
PDLIM3Q53GG5 RNF126P1-201ENST00000567452 1320 ntBASIC20.24■□□□□ 0.83
PDLIM3Q53GG5 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms