Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC33.47■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CHML-204ENST00000638121 920 ntTSL 2 BASIC33.47■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC33.47■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC33.46■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC33.46■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC018358.1-201ENST00000631079 1402 ntBASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 DUX4L11-201ENST00000611504 1267 ntBASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 DUX4L12-201ENST00000614593 1267 ntBASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 DUX4L14-201ENST00000621227 1267 ntBASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 AC012354.3-201ENST00000623734 483 ntBASIC33.45■■■□□ 2.95
SENP3-EIF4A1A0A087X0R7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC33.43■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC33.43■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC33.42■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 LINC01971-201ENST00000617888 1048 ntBASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC33.39■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SENP3-EIF4A1A0A087X0R7 AL592295.1-201ENST00000400984 884 ntBASIC33.38■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC33.38■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC33.38■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC33.38■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC33.37■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC33.37■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC33.37■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC33.37■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC33.36■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC33.36■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC33.35■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC33.35■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC33.34■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC33.34■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L13-201ENST00000554103 1267 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L15-201ENST00000611059 1267 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L23-201ENST00000615195 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L24-201ENST00000617576 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L22-201ENST00000618238 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L20-201ENST00000619712 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L21-201ENST00000622058 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L10-201ENST00000622460 1267 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 DUX4L25-201ENST00000624915 1269 ntBASIC33.33■■■□□ 2.93
SENP3-EIF4A1A0A087X0R7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC33.32■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 MIR935-201ENST00000401179 91 ntBASIC33.32■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC33.32■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC33.32■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC33.31■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC33.3■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC33.3■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC33.29■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC33.29■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC33.28■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC33.28■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC33.28■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC33.27■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC33.27■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC33.26■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
SENP3-EIF4A1A0A087X0R7 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC33.25■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC33.25■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC33.24■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC33.24■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 HES6-205ENST00000409356 528 ntTSL 2 BASIC33.24■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC33.24■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SENP3-EIF4A1A0A087X0R7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms