Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 KBTBD2-206ENST00000477129 695 ntTSL 29.45□□□□□ -0.96e-6■□□□□ 8.8
SMNDC1O75940 MARK3-211ENST00000556744 1051 ntTSL 1 (best)9.36□□□□□ -0.916e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-210ENST00000448788 572 ntTSL 49.33□□□□□ -0.926e-6■□□□□ 8.8
SMNDC1O75940 MARK3-210ENST00000556463 3584 ntTSL 1 (best)9.23□□□□□ -0.936e-6■□□□□ 8.8
SMNDC1O75940 THOC2-203ENST00000416618 657 ntTSL 59.09□□□□□ -0.952e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-206ENST00000433017 3626 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -16e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-209ENST00000440350 617 ntTSL 38.71□□□□□ -1.026e-6■□□□□ 8.8
SMNDC1O75940 THOC2-209ENST00000448128 1365 ntTSL 58.7□□□□□ -1.022e-9■□□□□ 8.8
SMNDC1O75940 MARK3-208ENST00000554627 1571 ntTSL 28.51□□□□□ -1.056e-6■□□□□ 8.8
SMNDC1O75940 MARK3-218ENST00000559274 1053 ntTSL 28.39□□□□□ -1.076e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-211ENST00000611938 3543 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.096e-6■□□□□ 8.8
SMNDC1O75940 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.116e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-214ENST00000617389 3259 ntAPPRIS P1 TSL 4 BASIC8.11□□□□□ -1.116e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC8.05□□□□□ -1.126e-6■□□□□ 8.8
SMNDC1O75940 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC7.92□□□□□ -1.146e-6■□□□□ 8.8
SMNDC1O75940 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.156e-6■□□□□ 8.8
SMNDC1O75940 THOC2-213ENST00000464604 664 ntTSL 27.84□□□□□ -1.152e-9■□□□□ 8.8
SMNDC1O75940 HNRNPAB-203ENST00000504796 578 ntTSL 27.79□□□□□ -1.166e-6■□□□□ 8.8
SMNDC1O75940 MARK3-215ENST00000558787 758 ntTSL 27.22□□□□□ -1.256e-6■□□□□ 8.8
SMNDC1O75940 THOC2-205ENST00000432353 3188 ntTSL 1 (best)6.9□□□□□ -1.32e-9■□□□□ 8.8
SMNDC1O75940 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.88□□□□□ -1.312e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.366e-6■□□□□ 8.8
SMNDC1O75940 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.652e-9■□□□□ 8.8
SMNDC1O75940 THOC2-208ENST00000441692 4364 ntTSL 54.26□□□□□ -1.732e-9■□□□□ 8.8
SMNDC1O75940 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.776e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.856e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.856e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.96e-6■□□□□ 8.8
SMNDC1O75940 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.932e-9■□□□□ 8.8
SMNDC1O75940 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.36□□□□□ -2.032e-9■□□□□ 8.8
SMNDC1O75940 GET4-205ENST00000441491 682 ntTSL 513.75□□□□□ -0.214e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-205ENST00000421037 559 ntTSL 412.99□□□□□ -0.334e-7■□□□□ 8.8
SMNDC1O75940 EME1-209ENST00000513077 562 ntTSL 412.87□□□□□ -0.354e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-209ENST00000539065 3303 ntTSL 2 BASIC12.1□□□□□ -0.474e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-207ENST00000473749 821 ntTSL 39.54□□□□□ -0.884e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.444e-7■□□□□ 8.8
SMNDC1O75940 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.834e-7■□□□□ 8.8
SMNDC1O75940 HECTD1-212ENST00000556004 595 ntTSL 29.24□□□□□ -0.933e-7■□□□□ 8.8
SMNDC1O75940 HECTD1-217ENST00000557369 554 ntTSL 44.56□□□□□ -1.683e-7■□□□□ 8.8
SMNDC1O75940 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.451e-323■□□□□ 8.8
SMNDC1O75940 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.871e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-206ENST00000605204 1399 ntTSL 1 (best)17.2■□□□□ 0.341e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-202ENST00000466448 1264 ntAPPRIS ALT2 TSL 317.03■□□□□ 0.321e-10■□□□□ 8.8
SMNDC1O75940 SRSF4-208ENST00000634348 8128 ntTSL 511.8□□□□□ -0.521e-10■□□□□ 8.8
SMNDC1O75940 SNORD33-201ENST00000362761 85 ntBASIC1.91□□□□□ -2.11e-323■□□□□ 8.7
SMNDC1O75940 NARF-225ENST00000584445 2484 ntTSL 212.33□□□□□ -0.442e-6■□□□□ 8.7
SMNDC1O75940 NARF-227ENST00000584965 300 ntTSL 39.72□□□□□ -0.852e-6■□□□□ 8.7
SMNDC1O75940 NARF-226ENST00000584513 500 ntTSL 38.59□□□□□ -1.032e-6■□□□□ 8.7
SMNDC1O75940 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.512e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.53■□□□□ 0.882e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.532e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.71■□□□□ 0.432e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.28■□□□□ 0.362e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.93■□□□□ 0.32e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.05■□□□□ 0.162e-7■□□□□ 8.7
SMNDC1O75940 SREK1-212ENST00000522912 2047 ntTSL 1 (best)16.04■□□□□ 0.162e-7■□□□□ 8.7
SMNDC1O75940 TYK2-211ENST00000529412 711 ntTSL 315.53■□□□□ 0.082e-7■□□□□ 8.7
SMNDC1O75940 THOP1-210ENST00000590533 616 ntTSL 215.12■□□□□ 0.012e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-221ENST00000552383 1267 ntTSL 215.05■□□□□ -02e-7■□□□□ 8.7
SMNDC1O75940 RNF10-207ENST00000536869 644 ntTSL 514.71□□□□□ -0.052e-7■□□□□ 8.7
SMNDC1O75940 SREK1-209ENST00000520953 2172 ntTSL 514.13□□□□□ -0.152e-7■□□□□ 8.7
SMNDC1O75940 THOP1-212ENST00000591149 789 ntTSL 313.89□□□□□ -0.192e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.92□□□□□ -0.342e-7■□□□□ 8.7
SMNDC1O75940 RNF10-201ENST00000325954 3825 ntTSL 1 (best) BASIC12.89□□□□□ -0.352e-7■□□□□ 8.7
SMNDC1O75940 RNF10-203ENST00000413266 2671 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.352e-7■□□□□ 8.7
SMNDC1O75940 RNF10-212ENST00000538796 1206 ntTSL 512.56□□□□□ -0.42e-7■□□□□ 8.7
SMNDC1O75940 RNF10-216ENST00000542438 562 ntTSL 412.13□□□□□ -0.472e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-209ENST00000546979 554 ntTSL 311.95□□□□□ -0.52e-7■□□□□ 8.7
SMNDC1O75940 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.552e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-203ENST00000345133 1088 ntTSL 3 BASIC9.85□□□□□ -0.832e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC8.99□□□□□ -0.972e-7■□□□□ 8.7
SMNDC1O75940 SREK1-215ENST00000524111 4074 ntTSL 58.71□□□□□ -1.022e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC8.58□□□□□ -1.042e-7■□□□□ 8.7
SMNDC1O75940 SREK1-213ENST00000523655 606 ntTSL 58.39□□□□□ -1.072e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-216ENST00000550958 706 ntTSL 38.2□□□□□ -1.12e-7■□□□□ 8.7
SMNDC1O75940 RNF10-205ENST00000535417 546 ntTSL 38□□□□□ -1.132e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.76□□□□□ -1.332e-7■□□□□ 8.7
SMNDC1O75940 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.61□□□□□ -1.352e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-213ENST00000549468 526 ntTSL 36.41□□□□□ -1.382e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.36□□□□□ -1.392e-7■□□□□ 8.7
SMNDC1O75940 RNF10-218ENST00000543578 548 ntTSL 46.32□□□□□ -1.42e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-215ENST00000549780 801 ntTSL 55.88□□□□□ -1.472e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-217ENST00000551333 564 ntTSL 35.13□□□□□ -1.592e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-214ENST00000549546 820 ntTSL 54.98□□□□□ -1.612e-7■□□□□ 8.7
SMNDC1O75940 SREK1-208ENST00000520580 2369 ntTSL 24.8□□□□□ -1.642e-7■□□□□ 8.7
SMNDC1O75940 SREK1-201ENST00000284041 3751 ntTSL 1 (best)4.67□□□□□ -1.662e-7■□□□□ 8.7
SMNDC1O75940 TGIF1-212ENST00000549253 563 ntTSL 34.49□□□□□ -1.692e-7■□□□□ 8.7
SMNDC1O75940 SREK1-206ENST00000519259 9353 ntTSL 23.46□□□□□ -1.862e-7■□□□□ 8.7
SMNDC1O75940 SLC22A31-205ENST00000603735 791 ntTSL 315.43■□□□□ 0.061e-9■□□□□ 8.7
SMNDC1O75940 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.81■□□□□ 0.442e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC13.48□□□□□ -0.252e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-203ENST00000510461 3845 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.632e-10■□□□□ 8.7
SMNDC1O75940 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.392e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.1□□□□□ -1.432e-10■□□□□ 8.7
SMNDC1O75940 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.52e-10■□□□□ 8.7
SMNDC1O75940 ATP5A1-205ENST00000586592 2214 ntTSL 223.83■■□□□ 1.417e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.83■■□□□ 1.417e-8■□□□□ 8.7
SMNDC1O75940 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.197e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-208ENST00000589252 662 ntTSL 517.54■□□□□ 0.47e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-213ENST00000590406 756 ntTSL 317.54■□□□□ 0.47e-8■□□□□ 8.7
Retrieved 100 of 11,362 protein–RNA pairs in 292.9 ms