RNA–Protein interactions for RNA: ENST00000522912.5

SREK1-212, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 1 (best)

Gene SREK1, Length 2,047 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-212ENST00000522912 NISCHQ9Y2I1 1504 aa37.58■■■■□ 3.61
SREK1-212ENST00000522912 CCDC180Q9P1Z9 1646 aa32.59■■■□□ 2.81
SREK1-212ENST00000522912 ZCCHC6Q5VYS8 1495 aaKnown RBP31.62■■■□□ 2.65
SREK1-212ENST00000522912 DCAF8L2P0C7V8 631 aa31.02■■■□□ 2.56
SREK1-212ENST00000522912 DCAF1Q9Y4B6 1507 aa31.01■■■□□ 2.55
SREK1-212ENST00000522912 SHROOM4Q9ULL8 1493 aa30.97■■■□□ 2.55
SREK1-212ENST00000522912 ABCC9O60706 1549 aa30.65■■■□□ 2.5
SREK1-212ENST00000522912 MYO15BQ96JP2 1530 aa30.51■■■□□ 2.47
SREK1-212ENST00000522912 NACADO15069 1562 aa30.28■■■□□ 2.44
SREK1-212ENST00000522912 SCRIBQ14160 1630 aa30.1■■■□□ 2.41
SREK1-212ENST00000522912 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
SREK1-212ENST00000522912 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
SREK1-212ENST00000522912 UNC13AQ9UPW8 1703 aa29.49■■■□□ 2.31
SREK1-212ENST00000522912 RSF1Q96T23 1441 aaPredicted RBP29.29■■■□□ 2.28
SREK1-212ENST00000522912 CECR2Q9BXF3 1484 aa29.25■■■□□ 2.27
SREK1-212ENST00000522912 BICRAQ9NZM4 1560 aa29.13■■■□□ 2.25
SREK1-212ENST00000522912 MROH2BQ7Z745 1585 aa29.09■■■□□ 2.25
SREK1-212ENST00000522912 PABPN1Q86U42 306 aaKnown RBP eCLIP29■■■□□ 2.232e-9■□□□□ 8.9
SREK1-212ENST00000522912 BAZ1AQ9NRL2 1556 aaPredicted RBP28.96■■■□□ 2.23
SREK1-212ENST00000522912 WIZO95785 1651 aa28.89■■■□□ 2.22
SREK1-212ENST00000522912 SMARCA4P51532 1647 aa28.84■■■□□ 2.21
SREK1-212ENST00000522912 CHIC1Q5VXU3 224 aa28.78■■■□□ 2.2
SREK1-212ENST00000522912 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
SREK1-212ENST00000522912 PEG3Q9GZU2 1588 aa28.43■■■□□ 2.14
SREK1-212ENST00000522912 SMARCA2P51531 1590 aa28.3■■■□□ 2.12
SREK1-212ENST00000522912 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
SREK1-212ENST00000522912 ATAD2BQ9ULI0 1458 aa28.29■■■□□ 2.12
SREK1-212ENST00000522912 EIF4G1Q04637 1599 aaKnown RBP28.2■■■□□ 2.1
SREK1-212ENST00000522912 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
SREK1-212ENST00000522912 TRIM41Q8WV44 630 aa28.05■■■□□ 2.08
SREK1-212ENST00000522912 NCAPD3P42695 1498 aa27.96■■■□□ 2.07
SREK1-212ENST00000522912 HMGXB3Q12766 1538 aa27.94■■■□□ 2.06
SREK1-212ENST00000522912 ABCC8Q09428 1581 aa27.82■■■□□ 2.04
SREK1-212ENST00000522912 LOC105371045A0A1W2PR82 267 aa27.75■■■□□ 2.03
SREK1-212ENST00000522912 CC2D2AQ9P2K1 1620 aa27.73■■■□□ 2.03
SREK1-212ENST00000522912 FAM9AQ8IZU1 332 aaPredicted RBP27.63■■■□□ 2.01
SREK1-212ENST00000522912 WRNQ14191 1432 aaPredicted RBP eCLIP27.53■■■□□ 2
SREK1-212ENST00000522912 SYNJ1O43426 1573 aa27.46■■□□□ 1.99
SREK1-212ENST00000522912 CFTRP13569 1480 aa27.44■■□□□ 1.98
SREK1-212ENST00000522912 SOGA1O94964 1423 aa27.35■■□□□ 1.97
SREK1-212ENST00000522912 PRDM2Q13029 1718 aa27.33■■□□□ 1.97
SREK1-212ENST00000522912 TOP2BQ02880 1626 aa27.28■■□□□ 1.96
SREK1-212ENST00000522912 CADPSQ9ULU8 1353 aa27.28■■□□□ 1.96
SREK1-212ENST00000522912 EHMT2Q96KQ7 1210 aa27.28■■□□□ 1.96
SREK1-212ENST00000522912 RUSC2Q8N2Y8 1516 aa27.26■■□□□ 1.95
SREK1-212ENST00000522912 BIVM-ERCC5R4GMW8 1640 aa27.25■■□□□ 1.95
SREK1-212ENST00000522912 EEA1Q15075 1411 aa27.23■■□□□ 1.95
SREK1-212ENST00000522912 CUX1P39880 1505 aa27.17■■□□□ 1.94
SREK1-212ENST00000522912 CSRNP3Q8WYN3 585 aa27.13■■□□□ 1.93
SREK1-212ENST00000522912 DNAJC5BQ9UF47 199 aa27.07■■□□□ 1.92
SREK1-212ENST00000522912 NESP48681 1621 aa27.03■■□□□ 1.92
SREK1-212ENST00000522912 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
SREK1-212ENST00000522912 LAMC3Q9Y6N6 1575 aa26.95■■□□□ 1.91
SREK1-212ENST00000522912 KIF21BO75037 1637 aa26.91■■□□□ 1.9
SREK1-212ENST00000522912 GOLGA3Q08378 1498 aa26.91■■□□□ 1.9
SREK1-212ENST00000522912 TNIKQ9UKE5 1360 aa26.9■■□□□ 1.9
SREK1-212ENST00000522912 CEP164Q9UPV0 1460 aa26.88■■□□□ 1.89
SREK1-212ENST00000522912 UBTFP17480 764 aaKnown RBP26.82■■□□□ 1.88
SREK1-212ENST00000522912 FGD5Q6ZNL6 1462 aa26.81■■□□□ 1.88
SREK1-212ENST00000522912 CEP162Q5TB80 1403 aa26.8■■□□□ 1.88
SREK1-212ENST00000522912 DNMBPQ6XZF7 1577 aa26.79■■□□□ 1.88
SREK1-212ENST00000522912 KIF27Q86VH2 1401 aa26.79■■□□□ 1.88
SREK1-212ENST00000522912 RAPGEF2Q9Y4G8 1499 aa26.76■■□□□ 1.87
SREK1-212ENST00000522912 TOPBP1Q92547 1522 aa26.75■■□□□ 1.87
SREK1-212ENST00000522912 PCGF6Q9BYE7 350 aa26.74■■□□□ 1.87
SREK1-212ENST00000522912 PDS5BQ9NTI5 1447 aa26.73■■□□□ 1.87
SREK1-212ENST00000522912 PRXQ9BXM0 1461 aa26.71■■□□□ 1.87
SREK1-212ENST00000522912 CUX2O14529 1486 aa26.7■■□□□ 1.86
SREK1-212ENST00000522912 KIF21AQ7Z4S6 1674 aa26.7■■□□□ 1.86
SREK1-212ENST00000522912 URB2Q14146 1524 aaKnown RBP26.67■■□□□ 1.86
SREK1-212ENST00000522912 ERICH3Q5RHP9 1530 aa26.66■■□□□ 1.86
SREK1-212ENST00000522912 POLA1P09884 1462 aaPredicted RBP26.64■■□□□ 1.86
SREK1-212ENST00000522912 TRIM26Q12899 539 aaPredicted RBP26.61■■□□□ 1.85
SREK1-212ENST00000522912 RAD54L2Q9Y4B4 1467 aa26.6■■□□□ 1.85
SREK1-212ENST00000522912 IGF1RP08069 1367 aa26.57■■□□□ 1.84
SREK1-212ENST00000522912 ABCA10Q8WWZ4 1543 aa26.56■■□□□ 1.84
SREK1-212ENST00000522912 CLIP1P30622 1438 aa26.52■■□□□ 1.84
SREK1-212ENST00000522912 WDR97A6NE52 1622 aa26.47■■□□□ 1.83
SREK1-212ENST00000522912 PPARGC1BQ86YN6 1023 aaKnown RBP26.45■■□□□ 1.82
SREK1-212ENST00000522912 CARMIL1Q5VZK9 1371 aa26.43■■□□□ 1.82
SREK1-212ENST00000522912 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
SREK1-212ENST00000522912 RANGAP1P46060 587 aaPredicted RBP26.38■■□□□ 1.81
SREK1-212ENST00000522912 TARBP1Q13395 1621 aaKnown RBP26.34■■□□□ 1.81
SREK1-212ENST00000522912 ABCA5Q8WWZ7 1642 aa26.34■■□□□ 1.81
SREK1-212ENST00000522912 VPS8Q8N3P4 1428 aa26.31■■□□□ 1.8
SREK1-212ENST00000522912 TDRD9Q8NDG6 1382 aaKnown RBP26.3■■□□□ 1.8
SREK1-212ENST00000522912 CUL7Q14999 1698 aa26.29■■□□□ 1.8
SREK1-212ENST00000522912 GAPVD1Q14C86 1478 aa26.26■■□□□ 1.79
SREK1-212ENST00000522912 ARAP1Q96P48 1450 aa26.25■■□□□ 1.79
SREK1-212ENST00000522912 WDR62O43379 1518 aa26.25■■□□□ 1.79
SREK1-212ENST00000522912 ERCC6Q03468 1493 aa26.2■■□□□ 1.78
SREK1-212ENST00000522912 ARHGAP35Q9NRY4 1499 aa26.19■■□□□ 1.78
SREK1-212ENST00000522912 HRCP23327 699 aa26.18■■□□□ 1.78
SREK1-212ENST00000522912 TTBK1Q5TCY1 1321 aaPredicted RBP26.16■■□□□ 1.78
SREK1-212ENST00000522912 THOC2Q8NI27 1593 aaKnown RBP26.13■■□□□ 1.77
SREK1-212ENST00000522912 PBRM1Q86U86 1689 aa26.12■■□□□ 1.77
SREK1-212ENST00000522912 IFT140Q96RY7 1462 aa26.1■■□□□ 1.77
SREK1-212ENST00000522912 AQRO60306 1485 aaKnown RBP eCLIP26.09■■□□□ 1.776e-7■□□□□ 10.4
SREK1-212ENST00000522912 CTTNBP2Q8WZ74 1663 aa26.09■■□□□ 1.77
SREK1-212ENST00000522912 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms