Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.82■□□□□ 0.44
LSM1O15116 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 TNRC18P3-201ENST00000441896 2691 ntBASIC17.82■□□□□ 0.44
LSM1O15116 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM1O15116 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LSM1O15116 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.82■□□□□ 0.44
LSM1O15116 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.82■□□□□ 0.44
LSM1O15116 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LSM1O15116 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM1O15116 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.82■□□□□ 0.44
LSM1O15116 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LSM1O15116 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM1O15116 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.82■□□□□ 0.44
LSM1O15116 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM1O15116 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LSM1O15116 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM1O15116 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.81■□□□□ 0.44
LSM1O15116 AL023284.2-201ENST00000405850 579 ntBASIC17.81■□□□□ 0.44
LSM1O15116 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 CD177P1-201ENST00000606252 935 ntBASIC17.81■□□□□ 0.44
LSM1O15116 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LSM1O15116 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM1O15116 AL135905.2-201ENST00000584934 1404 ntBASIC17.81■□□□□ 0.44
LSM1O15116 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LSM1O15116 AC008894.3-201ENST00000624324 3103 ntBASIC17.81■□□□□ 0.44
LSM1O15116 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 GPAT2P1-201ENST00000444924 1672 ntBASIC17.8■□□□□ 0.44
LSM1O15116 AC099398.1-201ENST00000567919 2776 ntBASIC17.8■□□□□ 0.44
LSM1O15116 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LSM1O15116 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM1O15116 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM1O15116 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 MIR564-202ENST00000385049 94 ntBASIC17.8■□□□□ 0.44
LSM1O15116 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LSM1O15116 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.8■□□□□ 0.44
LSM1O15116 DGCR10-201ENST00000609839 495 ntBASIC17.8■□□□□ 0.44
LSM1O15116 ITM2C-210ENST00000620962 501 ntBASIC17.8■□□□□ 0.44
LSM1O15116 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LSM1O15116 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LSM1O15116 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM1O15116 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM1O15116 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LSM1O15116 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LSM1O15116 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms