Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGB3O15347 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
HMGB3O15347 ZNRF2P1-201ENST00000441407 443 ntBASIC20.16■□□□□ 0.82
HMGB3O15347 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGB3O15347 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
HMGB3O15347 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB3O15347 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
HMGB3O15347 AL031258.1-201ENST00000623562 325 ntBASIC20.15■□□□□ 0.82
HMGB3O15347 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
HMGB3O15347 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HMGB3O15347 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
HMGB3O15347 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.14■□□□□ 0.81
HMGB3O15347 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGB3O15347 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HMGB3O15347 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.14■□□□□ 0.81
HMGB3O15347 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGB3O15347 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGB3O15347 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGB3O15347 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB3O15347 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGB3O15347 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGB3O15347 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGB3O15347 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGB3O15347 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HMGB3O15347 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB3O15347 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGB3O15347 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB3O15347 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB3O15347 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB3O15347 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGB3O15347 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.1■□□□□ 0.81
HMGB3O15347 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.1■□□□□ 0.81
HMGB3O15347 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGB3O15347 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.09■□□□□ 0.81
HMGB3O15347 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB3O15347 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HMGB3O15347 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGB3O15347 WASH5P-204ENST00000632292 975 ntBASIC20.09■□□□□ 0.81
HMGB3O15347 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HMGB3O15347 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
HMGB3O15347 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.08■□□□□ 0.81
HMGB3O15347 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB3O15347 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGB3O15347 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGB3O15347 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB3O15347 LINC01003-201ENST00000564834 1764 ntBASIC20.08■□□□□ 0.8
HMGB3O15347 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB3O15347 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB3O15347 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB3O15347 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB3O15347 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB3O15347 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB3O15347 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB3O15347 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB3O15347 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB3O15347 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB3O15347 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB3O15347 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB3O15347 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB3O15347 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB3O15347 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB3O15347 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB3O15347 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB3O15347 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB3O15347 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB3O15347 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB3O15347 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB3O15347 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB3O15347 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HMGB3O15347 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB3O15347 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB3O15347 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB3O15347 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB3O15347 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB3O15347 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.02■□□□□ 0.79
HMGB3O15347 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB3O15347 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB3O15347 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB3O15347 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGB3O15347 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HMGB3O15347 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HMGB3O15347 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB3O15347 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB3O15347 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
HMGB3O15347 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
HMGB3O15347 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
HMGB3O15347 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
HMGB3O15347 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB3O15347 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB3O15347 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB3O15347 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB3O15347 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HMGB3O15347 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HMGB3O15347 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HMGB3O15347 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.97■□□□□ 0.79
HMGB3O15347 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB3O15347 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.97■□□□□ 0.79
HMGB3O15347 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.97■□□□□ 0.79
HMGB3O15347 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
HMGB3O15347 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms