RNA–Protein interactions for RNA: ENST00000641023.1

PHGDH-208, Transcript of phosphoglycerate dehydrogenase, humanhuman

APPRIS P1 BASIC

Gene PHGDH, Length 2,096 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-208ENST00000641023 NISCHQ9Y2I1 1504 aa38.43■■■■□ 3.74
PHGDH-208ENST00000641023 CCDC180Q9P1Z9 1646 aa33.33■■■□□ 2.93
PHGDH-208ENST00000641023 ZCCHC6Q5VYS8 1495 aaKnown RBP32.32■■■□□ 2.76
PHGDH-208ENST00000641023 DCAF8L2P0C7V8 631 aa31.81■■■□□ 2.68
PHGDH-208ENST00000641023 DCAF1Q9Y4B6 1507 aa31.76■■■□□ 2.67
PHGDH-208ENST00000641023 SHROOM4Q9ULL8 1493 aa31.59■■■□□ 2.65
PHGDH-208ENST00000641023 ABCC9O60706 1549 aa31.38■■■□□ 2.61
PHGDH-208ENST00000641023 MYO15BQ96JP2 1530 aa31.3■■■□□ 2.6
PHGDH-208ENST00000641023 NACADO15069 1562 aa31.04■■■□□ 2.56
PHGDH-208ENST00000641023 SCRIBQ14160 1630 aa30.73■■■□□ 2.51
PHGDH-208ENST00000641023 RB1CC1Q8TDY2 1594 aa30.72■■■□□ 2.51
PHGDH-208ENST00000641023 SUPT5HO00267 1087 aaKnown RBP30.57■■■□□ 2.48
PHGDH-208ENST00000641023 UNC13AQ9UPW8 1703 aa30.03■■■□□ 2.4
PHGDH-208ENST00000641023 RSF1Q96T23 1441 aaPredicted RBP29.93■■■□□ 2.38
PHGDH-208ENST00000641023 CECR2Q9BXF3 1484 aa29.85■■■□□ 2.37
PHGDH-208ENST00000641023 BICRAQ9NZM4 1560 aa29.75■■■□□ 2.35
PHGDH-208ENST00000641023 MROH2BQ7Z745 1585 aa29.7■■■□□ 2.34
PHGDH-208ENST00000641023 PABPN1Q86U42 306 aaKnown RBP eCLIP29.69■■■□□ 2.34
PHGDH-208ENST00000641023 BAZ1AQ9NRL2 1556 aaPredicted RBP29.67■■■□□ 2.34
PHGDH-208ENST00000641023 SMARCA4P51532 1647 aa29.47■■■□□ 2.31
PHGDH-208ENST00000641023 WIZO95785 1651 aa29.45■■■□□ 2.31
PHGDH-208ENST00000641023 CHIC1Q5VXU3 224 aa29.36■■■□□ 2.29
PHGDH-208ENST00000641023 TOP2AP11388 1531 aaKnown RBP29.16■■■□□ 2.26
PHGDH-208ENST00000641023 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
PHGDH-208ENST00000641023 ATAD2BQ9ULI0 1458 aa28.95■■■□□ 2.23
PHGDH-208ENST00000641023 SMARCA2P51531 1590 aa28.94■■■□□ 2.22
PHGDH-208ENST00000641023 CCDC88BA6NC98 1476 aa28.89■■■□□ 2.22
PHGDH-208ENST00000641023 EIF4G1Q04637 1599 aaKnown RBP28.87■■■□□ 2.21
PHGDH-208ENST00000641023 BAZ1BQ9UIG0 1483 aaKnown RBP28.82■■■□□ 2.2
PHGDH-208ENST00000641023 TRIM41Q8WV44 630 aa28.74■■■□□ 2.19
PHGDH-208ENST00000641023 NCAPD3P42695 1498 aa28.67■■■□□ 2.18
PHGDH-208ENST00000641023 HMGXB3Q12766 1538 aa28.62■■■□□ 2.17
PHGDH-208ENST00000641023 CC2D2AQ9P2K1 1620 aa28.37■■■□□ 2.13
PHGDH-208ENST00000641023 ABCC8Q09428 1581 aa28.35■■■□□ 2.13
PHGDH-208ENST00000641023 LOC105371045A0A1W2PR82 267 aa28.26■■■□□ 2.11
PHGDH-208ENST00000641023 FAM9AQ8IZU1 332 aaPredicted RBP28.21■■■□□ 2.11
PHGDH-208ENST00000641023 WRNQ14191 1432 aaPredicted RBP eCLIP28.19■■■□□ 2.1
PHGDH-208ENST00000641023 CFTRP13569 1480 aa28.11■■■□□ 2.09
PHGDH-208ENST00000641023 SYNJ1O43426 1573 aa27.99■■■□□ 2.07
PHGDH-208ENST00000641023 CADPSQ9ULU8 1353 aa27.98■■■□□ 2.07
PHGDH-208ENST00000641023 EEA1Q15075 1411 aa27.92■■■□□ 2.06
PHGDH-208ENST00000641023 SOGA1O94964 1423 aa27.91■■■□□ 2.06
PHGDH-208ENST00000641023 TOP2BQ02880 1626 aa27.88■■■□□ 2.05
PHGDH-208ENST00000641023 PRDM2Q13029 1718 aa27.88■■■□□ 2.05
PHGDH-208ENST00000641023 BIVM-ERCC5R4GMW8 1640 aa27.82■■■□□ 2.04
PHGDH-208ENST00000641023 EHMT2Q96KQ7 1210 aa27.8■■■□□ 2.04
PHGDH-208ENST00000641023 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
PHGDH-208ENST00000641023 RUSC2Q8N2Y8 1516 aa27.77■■■□□ 2.04
PHGDH-208ENST00000641023 CUX1P39880 1505 aa27.74■■■□□ 2.03
PHGDH-208ENST00000641023 FANCD2Q9BXW9 1451 aa27.65■■■□□ 2.02
PHGDH-208ENST00000641023 LAMC3Q9Y6N6 1575 aa27.64■■■□□ 2.01
PHGDH-208ENST00000641023 NESP48681 1621 aa27.61■■■□□ 2.01
PHGDH-208ENST00000641023 DNAJC5BQ9UF47 199 aa27.61■■■□□ 2.01
PHGDH-208ENST00000641023 GOLGA3Q08378 1498 aa27.54■■■□□ 2
PHGDH-208ENST00000641023 CEP164Q9UPV0 1460 aa27.52■■■□□ 2
PHGDH-208ENST00000641023 TNIKQ9UKE5 1360 aa27.51■■■□□ 2
PHGDH-208ENST00000641023 KIF21BO75037 1637 aa27.49■■□□□ 1.99
PHGDH-208ENST00000641023 UBTFP17480 764 aaKnown RBP27.48■■□□□ 1.99
PHGDH-208ENST00000641023 KIF27Q86VH2 1401 aa27.47■■□□□ 1.99
PHGDH-208ENST00000641023 PDS5BQ9NTI5 1447 aa27.47■■□□□ 1.99
PHGDH-208ENST00000641023 FGD5Q6ZNL6 1462 aa27.42■■□□□ 1.98
PHGDH-208ENST00000641023 DNMBPQ6XZF7 1577 aa27.42■■□□□ 1.98
PHGDH-208ENST00000641023 CEP162Q5TB80 1403 aa27.37■■□□□ 1.97
PHGDH-208ENST00000641023 TOPBP1Q92547 1522 aa27.36■■□□□ 1.97
PHGDH-208ENST00000641023 RAPGEF2Q9Y4G8 1499 aa27.32■■□□□ 1.96
PHGDH-208ENST00000641023 CUX2O14529 1486 aa27.32■■□□□ 1.96
PHGDH-208ENST00000641023 PRXQ9BXM0 1461 aa27.31■■□□□ 1.96
PHGDH-208ENST00000641023 ERICH3Q5RHP9 1530 aa27.28■■□□□ 1.96
PHGDH-208ENST00000641023 POLA1P09884 1462 aaPredicted RBP27.26■■□□□ 1.95
PHGDH-208ENST00000641023 PCGF6Q9BYE7 350 aa27.26■■□□□ 1.95
PHGDH-208ENST00000641023 URB2Q14146 1524 aaKnown RBP27.26■■□□□ 1.95
PHGDH-208ENST00000641023 KIF21AQ7Z4S6 1674 aa27.24■■□□□ 1.95
PHGDH-208ENST00000641023 TRIM26Q12899 539 aaPredicted RBP27.2■■□□□ 1.95
PHGDH-208ENST00000641023 IGF1RP08069 1367 aa27.19■■□□□ 1.94
PHGDH-208ENST00000641023 ABCA10Q8WWZ4 1543 aa27.19■■□□□ 1.94
PHGDH-208ENST00000641023 RAD54L2Q9Y4B4 1467 aa27.18■■□□□ 1.94
PHGDH-208ENST00000641023 CLIP1P30622 1438 aa27.12■■□□□ 1.93
PHGDH-208ENST00000641023 CARMIL1Q5VZK9 1371 aa27.07■■□□□ 1.92
PHGDH-208ENST00000641023 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
PHGDH-208ENST00000641023 WDR97A6NE52 1622 aa26.99■■□□□ 1.91
PHGDH-208ENST00000641023 RANGAP1P46060 587 aaPredicted RBP26.96■■□□□ 1.91
PHGDH-208ENST00000641023 TDRD9Q8NDG6 1382 aaKnown RBP26.93■■□□□ 1.9
PHGDH-208ENST00000641023 PPARGC1BQ86YN6 1023 aaKnown RBP26.93■■□□□ 1.9
PHGDH-208ENST00000641023 ERCC6Q03468 1493 aa26.91■■□□□ 1.9
PHGDH-208ENST00000641023 VPS8Q8N3P4 1428 aa26.91■■□□□ 1.9
PHGDH-208ENST00000641023 TARBP1Q13395 1621 aaKnown RBP26.9■■□□□ 1.9
PHGDH-208ENST00000641023 ABCA5Q8WWZ7 1642 aa26.9■■□□□ 1.9
PHGDH-208ENST00000641023 CUL7Q14999 1698 aa26.9■■□□□ 1.9
PHGDH-208ENST00000641023 GAPVD1Q14C86 1478 aa26.9■■□□□ 1.9
PHGDH-208ENST00000641023 WDR62O43379 1518 aa26.88■■□□□ 1.89
PHGDH-208ENST00000641023 IFT140Q96RY7 1462 aa26.79■■□□□ 1.88
PHGDH-208ENST00000641023 ARAP1Q96P48 1450 aa26.76■■□□□ 1.88
PHGDH-208ENST00000641023 APLP2Q06481 763 aa26.76■■□□□ 1.87
PHGDH-208ENST00000641023 ARHGAP35Q9NRY4 1499 aa26.74■■□□□ 1.87
PHGDH-208ENST00000641023 THOC2Q8NI27 1593 aaKnown RBP26.71■■□□□ 1.87
PHGDH-208ENST00000641023 AQRO60306 1485 aaKnown RBP eCLIP26.7■■□□□ 1.861e-6■■□□□ 14.4
PHGDH-208ENST00000641023 TTBK1Q5TCY1 1321 aaPredicted RBP26.67■■□□□ 1.86
PHGDH-208ENST00000641023 PBRM1Q86U86 1689 aa26.65■■□□□ 1.86
PHGDH-208ENST00000641023 HRCP23327 699 aa26.65■■□□□ 1.86
PHGDH-208ENST00000641023 GRIN2BQ13224 1484 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms