RNA–Protein interactions for RNA: ENST00000639244.1

SCN3A-209, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5 BASIC

Gene SCN3A, Length 8,854 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-209ENST00000639244 MYT1Q01538 1121 aa8.1□□□□□ -1.11
SCN3A-209ENST00000639244 PELP1Q8IZL8 1130 aaKnown RBP8□□□□□ -1.13
SCN3A-209ENST00000639244 TTBK1Q5TCY1 1321 aaPredicted RBP7.89□□□□□ -1.15
SCN3A-209ENST00000639244 SLC24A1O60721 1099 aa7.87□□□□□ -1.15
SCN3A-209ENST00000639244 ERICH6Q7L0X2 663 aa7.59□□□□□ -1.19
SCN3A-209ENST00000639244 DAXXQ9UER7 740 aaPredicted RBP7.36□□□□□ -1.23
SCN3A-209ENST00000639244 APLP2Q06481 763 aa7.25□□□□□ -1.25
SCN3A-209ENST00000639244 PRKCSHP14314 528 aaPredicted RBP7.25□□□□□ -1.25
SCN3A-209ENST00000639244 RANGAP1P46060 587 aaPredicted RBP7.1□□□□□ -1.27
SCN3A-209ENST00000639244 EIF5BO60841 1220 aaKnown RBP7.02□□□□□ -1.29
SCN3A-209ENST00000639244 NCBP3Q53F19 620 aaKnown RBP7.01□□□□□ -1.29
SCN3A-209ENST00000639244 EHMT2Q96KQ7 1210 aa6.99□□□□□ -1.29
SCN3A-209ENST00000639244 BCL11AQ9H165 835 aa6.9□□□□□ -1.3
SCN3A-209ENST00000639244 ARXQ96QS3 562 aa6.9□□□□□ -1.3
SCN3A-209ENST00000639244 RTN4Q9NQC3 1192 aaKnown RBP6.81□□□□□ -1.32
SCN3A-209ENST00000639244 AMER1Q5JTC6 1135 aaPredicted RBP6.79□□□□□ -1.32
SCN3A-209ENST00000639244 CENPBP07199 599 aaPredicted RBP6.79□□□□□ -1.32
SCN3A-209ENST00000639244 PLPPR3Q6T4P5 718 aa6.76□□□□□ -1.33
SCN3A-209ENST00000639244 HOMEZQ8IX15 550 aa6.7□□□□□ -1.34
SCN3A-209ENST00000639244 TULP1O00294 542 aaPredicted RBP6.63□□□□□ -1.35
SCN3A-209ENST00000639244 PODXL2Q9NZ53 605 aa6.62□□□□□ -1.35
SCN3A-209ENST00000639244 FAM9AQ8IZU1 332 aaPredicted RBP6.61□□□□□ -1.35
SCN3A-209ENST00000639244 TIMELESSQ9UNS1 1208 aa6.6□□□□□ -1.35
SCN3A-209ENST00000639244 NEFLP07196 543 aa6.58□□□□□ -1.36
SCN3A-209ENST00000639244 DCAF8L2P0C7V8 631 aa6.54□□□□□ -1.36
SCN3A-209ENST00000639244 KLHL34Q8N239 644 aa6.53□□□□□ -1.36
SCN3A-209ENST00000639244 HRCP23327 699 aa6.52□□□□□ -1.37
SCN3A-209ENST00000639244 UBE2Q2Q8WVN8 375 aa6.52□□□□□ -1.37
SCN3A-209ENST00000639244 NPM2Q86SE8 214 aaKnown RBP6.51□□□□□ -1.37
SCN3A-209ENST00000639244 PLEKHG5O94827 1062 aa6.5□□□□□ -1.37
SCN3A-209ENST00000639244 BCANQ96GW7 911 aa6.49□□□□□ -1.37
SCN3A-209ENST00000639244 KAT6BQ8WYB5 2073 aa6.49□□□□□ -1.37
SCN3A-209ENST00000639244 TAOK2Q9UL54 1235 aa6.48□□□□□ -1.37
SCN3A-209ENST00000639244 PKNOX2Q96KN3 472 aa6.47□□□□□ -1.37
SCN3A-209ENST00000639244 SCAF1Q9H7N4 1312 aaKnown RBP6.47□□□□□ -1.37
SCN3A-209ENST00000639244 PDIA4P13667 645 aaKnown RBP6.45□□□□□ -1.38
SCN3A-209ENST00000639244 C14orf37Q86TY3 774 aa6.45□□□□□ -1.38
SCN3A-209ENST00000639244 GLIPR1L2Q4G1C9 344 aa6.44□□□□□ -1.38
SCN3A-209ENST00000639244 ANP32EQ9BTT0 268 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 FBXO3Q9UK99 471 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 TPRNQ4KMQ1 711 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 PDE4CQ08493 712 aa6.4□□□□□ -1.39
SCN3A-209ENST00000639244 GTF3C3Q9Y5Q9 886 aa6.39□□□□□ -1.39
SCN3A-209ENST00000639244 ZNF326Q5BKZ1 582 aaKnown RBP6.38□□□□□ -1.39
SCN3A-209ENST00000639244 MYT1LQ9UL68 1186 aa6.38□□□□□ -1.39
SCN3A-209ENST00000639244 TAF7LQ5H9L4 462 aa6.37□□□□□ -1.39
SCN3A-209ENST00000639244 CLSPNQ9HAW4 1339 aa6.36□□□□□ -1.39
SCN3A-209ENST00000639244 CDK11AQ9UQ88 783 aaPredicted RBP6.36□□□□□ -1.39
SCN3A-209ENST00000639244 CDK11BP21127 795 aaKnown RBP6.35□□□□□ -1.39
SCN3A-209ENST00000639244 KCNA4P22459 653 aa6.35□□□□□ -1.39
SCN3A-209ENST00000639244 ERICH6BQ5W0A0 696 aa6.35□□□□□ -1.39
SCN3A-209ENST00000639244 HMGB1P09429 215 aaKnown RBP6.34□□□□□ -1.4
SCN3A-209ENST00000639244 BRD2P25440 801 aaKnown RBP6.32□□□□□ -1.4
SCN3A-209ENST00000639244 CHIC1Q5VXU3 224 aa6.32□□□□□ -1.4
SCN3A-209ENST00000639244 HAP1P54257 671 aaPredicted RBP6.29□□□□□ -1.4
SCN3A-209ENST00000639244 ZEB1P37275 1124 aaPredicted RBP6.28□□□□□ -1.4
SCN3A-209ENST00000639244 YTHDC1Q96MU7 727 aaKnown RBP6.27□□□□□ -1.41
SCN3A-209ENST00000639244 POLR3GLQ9BT43 218 aa6.27□□□□□ -1.41
SCN3A-209ENST00000639244 ACIN1Q9UKV3 1341 aaKnown RBP6.25□□□□□ -1.41
SCN3A-209ENST00000639244 SHROOM4Q9ULL8 1493 aa6.24□□□□□ -1.41
SCN3A-209ENST00000639244 CSRNP3Q8WYN3 585 aa6.23□□□□□ -1.41
SCN3A-209ENST00000639244 HSP90B1P14625 803 aaKnown RBP6.23□□□□□ -1.41
SCN3A-209ENST00000639244 NAP1L5Q96NT1 182 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-209ENST00000639244 ANO8Q9HCE9 1232 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-209ENST00000639244 CHMP4AQ9BY43 222 aa6.2□□□□□ -1.42
SCN3A-209ENST00000639244 FGD1P98174 961 aa6.19□□□□□ -1.42
SCN3A-209ENST00000639244 TRIM26Q12899 539 aaPredicted RBP6.16□□□□□ -1.42
SCN3A-209ENST00000639244 PLCB2Q00722 1185 aa6.15□□□□□ -1.42
SCN3A-209ENST00000639244 A0A0U1RQG5 324 aaPredicted RBP6.15□□□□□ -1.43
SCN3A-209ENST00000639244 CCDC136Q96JN2 1154 aa6.14□□□□□ -1.43
SCN3A-209ENST00000639244 BCCIPQ9P287 314 aaKnown RBP eCLIP6.14□□□□□ -1.43
SCN3A-209ENST00000639244 SUPT5HO00267 1087 aaKnown RBP6.13□□□□□ -1.43
SCN3A-209ENST00000639244 TMEM132AQ24JP5 1023 aa6.13□□□□□ -1.43
SCN3A-209ENST00000639244 LOC105371045A0A1W2PR82 267 aa6.13□□□□□ -1.43
SCN3A-209ENST00000639244 DHX37Q8IY37 1157 aaKnown RBP6.12□□□□□ -1.43
SCN3A-209ENST00000639244 BCL11BQ9C0K0 894 aaPredicted RBP6.12□□□□□ -1.43
SCN3A-209ENST00000639244 RTL5Q5HYW3 569 aaPredicted RBP6.11□□□□□ -1.43
SCN3A-209ENST00000639244 CCER1Q8TC90 406 aaPredicted RBP6.1□□□□□ -1.43
SCN3A-209ENST00000639244 CNKSR2Q8WXI2 1034 aa6.1□□□□□ -1.43
SCN3A-209ENST00000639244 CCDC9Q9Y3X0 531 aaKnown RBP6.09□□□□□ -1.43
SCN3A-209ENST00000639244 PPARGC1BQ86YN6 1023 aaKnown RBP6.06□□□□□ -1.44
SCN3A-209ENST00000639244 SALL2Q9Y467 1007 aaPredicted RBP6.06□□□□□ -1.44
SCN3A-209ENST00000639244 NCLP19338 710 aaKnown RBP6.05□□□□□ -1.44
SCN3A-209ENST00000639244 DEKP35659 375 aaKnown RBP6.05□□□□□ -1.44
SCN3A-209ENST00000639244 SAMD1Q6SPF0 538 aaPredicted RBP6.04□□□□□ -1.44
SCN3A-209ENST00000639244 RSPH4AQ5TD94 716 aa6.04□□□□□ -1.44
SCN3A-209ENST00000639244 PAXIP1Q6ZW49 1069 aaPredicted RBP6.04□□□□□ -1.44
SCN3A-209ENST00000639244 NEUROD1Q13562 356 aa6.03□□□□□ -1.44
SCN3A-209ENST00000639244 AAMPQ13685 434 aa6.03□□□□□ -1.44
SCN3A-209ENST00000639244 CLSTN1O94985 981 aa6.02□□□□□ -1.45
SCN3A-209ENST00000639244 PTMSP20962 102 aa6.02□□□□□ -1.45
SCN3A-209ENST00000639244 AEBP2Q6ZN18 517 aaPredicted RBP6.02□□□□□ -1.45
SCN3A-209ENST00000639244 PCGF6Q9BYE7 350 aa6.01□□□□□ -1.45
SCN3A-209ENST00000639244 RBM10P98175 930 aaKnown RBP6□□□□□ -1.45
SCN3A-209ENST00000639244 CNGB1Q14028 1251 aaPredicted RBP6□□□□□ -1.45
SCN3A-209ENST00000639244 PSMD1Q99460 953 aa6□□□□□ -1.45
SCN3A-209ENST00000639244 VSIG10Q8N0Z9 540 aa5.99□□□□□ -1.45
SCN3A-209ENST00000639244 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.99□□□□□ -1.45
SCN3A-209ENST00000639244 RSPH6AQ9H0K4 717 aa5.99□□□□□ -1.45
SCN3A-209ENST00000639244 ARID4BQ4LE39 1312 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms