RNA–Protein interactions for RNA: ENST00000621999.4

SCAMP1-207, Transcript of secretory carrier membrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP1, Length 4,509 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-207ENST00000621999 NISCHQ9Y2I1 1504 aa26.32■■□□□ 1.8
SCAMP1-207ENST00000621999 DCAF8L2P0C7V8 631 aa23.89■■□□□ 1.41
SCAMP1-207ENST00000621999 SHROOM4Q9ULL8 1493 aa22.72■■□□□ 1.23
SCAMP1-207ENST00000621999 ABCC9O60706 1549 aa22.62■■□□□ 1.21
SCAMP1-207ENST00000621999 CCDC180Q9P1Z9 1646 aa22.49■■□□□ 1.19
SCAMP1-207ENST00000621999 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
SCAMP1-207ENST00000621999 ZCCHC6Q5VYS8 1495 aaKnown RBP21.89■■□□□ 1.1
SCAMP1-207ENST00000621999 PABPN1Q86U42 306 aaKnown RBP eCLIP21.74■■□□□ 1.07
SCAMP1-207ENST00000621999 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
SCAMP1-207ENST00000621999 RB1CC1Q8TDY2 1594 aa21.45■■□□□ 1.02
SCAMP1-207ENST00000621999 NACADO15069 1562 aa21.41■■□□□ 1.02
SCAMP1-207ENST00000621999 DCAF1Q9Y4B6 1507 aa21.29■■□□□ 1
SCAMP1-207ENST00000621999 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
SCAMP1-207ENST00000621999 EHMT2Q96KQ7 1210 aa20.74■□□□□ 0.91
SCAMP1-207ENST00000621999 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
SCAMP1-207ENST00000621999 FAM9AQ8IZU1 332 aaPredicted RBP20.65■□□□□ 0.9
SCAMP1-207ENST00000621999 TRIM41Q8WV44 630 aa20.64■□□□□ 0.9
SCAMP1-207ENST00000621999 RSF1Q96T23 1441 aaPredicted RBP20.57■□□□□ 0.88
SCAMP1-207ENST00000621999 BAZ1AQ9NRL2 1556 aaPredicted RBP20.45■□□□□ 0.86
SCAMP1-207ENST00000621999 MROH2BQ7Z745 1585 aa20.41■□□□□ 0.86
SCAMP1-207ENST00000621999 CHIC1Q5VXU3 224 aa20.37■□□□□ 0.85
SCAMP1-207ENST00000621999 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
SCAMP1-207ENST00000621999 BICRAQ9NZM4 1560 aa20.24■□□□□ 0.83
SCAMP1-207ENST00000621999 UNC13AQ9UPW8 1703 aa20.17■□□□□ 0.82
SCAMP1-207ENST00000621999 RANGAP1P46060 587 aaPredicted RBP20.17■□□□□ 0.82
SCAMP1-207ENST00000621999 WIZO95785 1651 aa20.16■□□□□ 0.82
SCAMP1-207ENST00000621999 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
SCAMP1-207ENST00000621999 SMARCA2P51531 1590 aa20.1■□□□□ 0.81
SCAMP1-207ENST00000621999 ATAD2BQ9ULI0 1458 aa20.1■□□□□ 0.81
SCAMP1-207ENST00000621999 UBTFP17480 764 aaKnown RBP20.07■□□□□ 0.8
SCAMP1-207ENST00000621999 EIF4G1Q04637 1599 aaKnown RBP20.07■□□□□ 0.8
SCAMP1-207ENST00000621999 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
SCAMP1-207ENST00000621999 LOC105371045A0A1W2PR82 267 aa19.95■□□□□ 0.78
SCAMP1-207ENST00000621999 TOP2AP11388 1531 aaKnown RBP19.91■□□□□ 0.78
SCAMP1-207ENST00000621999 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
SCAMP1-207ENST00000621999 CC2D2AQ9P2K1 1620 aa19.85■□□□□ 0.77
SCAMP1-207ENST00000621999 NCAPD3P42695 1498 aa19.84■□□□□ 0.77
SCAMP1-207ENST00000621999 APLP2Q06481 763 aa19.78■□□□□ 0.76
SCAMP1-207ENST00000621999 TTBK1Q5TCY1 1321 aaPredicted RBP19.77■□□□□ 0.76
SCAMP1-207ENST00000621999 ATP1B4Q9UN42 357 aaPredicted RBP19.76■□□□□ 0.75
SCAMP1-207ENST00000621999 FBLN2P98095 1184 aa19.73■□□□□ 0.75
SCAMP1-207ENST00000621999 ERCC6Q03468 1493 aa19.72■□□□□ 0.75
SCAMP1-207ENST00000621999 CADPSQ9ULU8 1353 aa19.72■□□□□ 0.75
SCAMP1-207ENST00000621999 WRNQ14191 1432 aaPredicted RBP eCLIP19.7■□□□□ 0.74
SCAMP1-207ENST00000621999 CSRNP3Q8WYN3 585 aa19.67■□□□□ 0.74
SCAMP1-207ENST00000621999 PDS5BQ9NTI5 1447 aa19.61■□□□□ 0.73
SCAMP1-207ENST00000621999 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
SCAMP1-207ENST00000621999 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
SCAMP1-207ENST00000621999 PPARGC1BQ86YN6 1023 aaKnown RBP19.54■□□□□ 0.72
SCAMP1-207ENST00000621999 NESP48681 1621 aa19.49■□□□□ 0.71
SCAMP1-207ENST00000621999 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
SCAMP1-207ENST00000621999 PEG3Q9GZU2 1588 aa19.46■□□□□ 0.71
SCAMP1-207ENST00000621999 CEP164Q9UPV0 1460 aa19.42■□□□□ 0.7
SCAMP1-207ENST00000621999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
SCAMP1-207ENST00000621999 HNRNPUL2Q1KMD3 747 aaKnown RBP19.4■□□□□ 0.7
SCAMP1-207ENST00000621999 P3H3Q8IVL6 736 aa19.39■□□□□ 0.7
SCAMP1-207ENST00000621999 CFTRP13569 1480 aa19.38■□□□□ 0.69
SCAMP1-207ENST00000621999 SOGA1O94964 1423 aa19.36■□□□□ 0.69
SCAMP1-207ENST00000621999 CHMP7Q8WUX9 453 aaPredicted RBP19.35■□□□□ 0.69
SCAMP1-207ENST00000621999 KIF27Q86VH2 1401 aa19.34■□□□□ 0.69
SCAMP1-207ENST00000621999 CUX2O14529 1486 aa19.32■□□□□ 0.68
SCAMP1-207ENST00000621999 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
SCAMP1-207ENST00000621999 PCGF6Q9BYE7 350 aa19.29■□□□□ 0.68
SCAMP1-207ENST00000621999 EEA1Q15075 1411 aa19.24■□□□□ 0.67
SCAMP1-207ENST00000621999 ARID3CA6NKF2 412 aa19.2■□□□□ 0.66
SCAMP1-207ENST00000621999 FGD5Q6ZNL6 1462 aa19.15■□□□□ 0.66
SCAMP1-207ENST00000621999 RAD54L2Q9Y4B4 1467 aa19.14■□□□□ 0.65
SCAMP1-207ENST00000621999 CARMIL1Q5VZK9 1371 aa19.14■□□□□ 0.65
SCAMP1-207ENST00000621999 LAMC3Q9Y6N6 1575 aa19.13■□□□□ 0.65
SCAMP1-207ENST00000621999 RUSC2Q8N2Y8 1516 aa19.13■□□□□ 0.65
SCAMP1-207ENST00000621999 GOLGA3Q08378 1498 aa19.09■□□□□ 0.65
SCAMP1-207ENST00000621999 SYNJ1O43426 1573 aa19.07■□□□□ 0.64
SCAMP1-207ENST00000621999 MRC2Q9UBG0 1479 aa19.06■□□□□ 0.64
SCAMP1-207ENST00000621999 ITGAEP38570 1179 aa19.06■□□□□ 0.64
SCAMP1-207ENST00000621999 CUX1P39880 1505 aa19.04■□□□□ 0.64
SCAMP1-207ENST00000621999 TOPBP1Q92547 1522 aa19.04■□□□□ 0.64
SCAMP1-207ENST00000621999 CLIP1P30622 1438 aa19■□□□□ 0.63
SCAMP1-207ENST00000621999 AQRO60306 1485 aaKnown RBP eCLIP19■□□□□ 0.63
SCAMP1-207ENST00000621999 POLA1P09884 1462 aaPredicted RBP18.96■□□□□ 0.63
SCAMP1-207ENST00000621999 TNIKQ9UKE5 1360 aa18.95■□□□□ 0.62
SCAMP1-207ENST00000621999 TRIM26Q12899 539 aaPredicted RBP18.95■□□□□ 0.62
SCAMP1-207ENST00000621999 CEP162Q5TB80 1403 aa18.95■□□□□ 0.62
SCAMP1-207ENST00000621999 GAPVD1Q14C86 1478 aa18.94■□□□□ 0.62
SCAMP1-207ENST00000621999 TOP2BQ02880 1626 aa18.93■□□□□ 0.62
SCAMP1-207ENST00000621999 IGF1RP08069 1367 aa18.93■□□□□ 0.62
SCAMP1-207ENST00000621999 DNMBPQ6XZF7 1577 aa18.92■□□□□ 0.62
SCAMP1-207ENST00000621999 URB2Q14146 1524 aaKnown RBP18.91■□□□□ 0.62
SCAMP1-207ENST00000621999 RAPGEF2Q9Y4G8 1499 aa18.89■□□□□ 0.61
SCAMP1-207ENST00000621999 MYT1LQ9UL68 1186 aa18.88■□□□□ 0.61
SCAMP1-207ENST00000621999 FAM50AQ14320 339 aaKnown RBP18.86■□□□□ 0.61
SCAMP1-207ENST00000621999 IFT140Q96RY7 1462 aa18.83■□□□□ 0.6
SCAMP1-207ENST00000621999 CDK11AQ9UQ88 783 aaPredicted RBP18.81■□□□□ 0.6
SCAMP1-207ENST00000621999 NPM1P06748 294 aaKnown RBP eCLIP18.81■□□□□ 0.6
SCAMP1-207ENST00000621999 CCER1Q8TC90 406 aaPredicted RBP18.78■□□□□ 0.6
SCAMP1-207ENST00000621999 GRIN2BQ13224 1484 aa18.76■□□□□ 0.59
SCAMP1-207ENST00000621999 KIF21AQ7Z4S6 1674 aa18.76■□□□□ 0.59
SCAMP1-207ENST00000621999 JPH4Q96JJ6 628 aa18.75■□□□□ 0.59
SCAMP1-207ENST00000621999 ZNF777Q9ULD5 760 aaPredicted RBP18.73■□□□□ 0.59
SCAMP1-207ENST00000621999 ABCA10Q8WWZ4 1543 aa18.71■□□□□ 0.59
SCAMP1-207ENST00000621999 ZNF608Q9ULD9 1512 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms