RNA–Protein interactions for RNA: ENST00000620463.1

COL1A2-213, Transcript of collagen type I alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL1A2, Length 4,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A2-213ENST00000620463 PELP1Q8IZL8 1130 aaKnown RBP21.64■■□□□ 1.05
COL1A2-213ENST00000620463 DCAF8L2P0C7V8 631 aa21.43■■□□□ 1.02
COL1A2-213ENST00000620463 NISCHQ9Y2I1 1504 aa21.36■■□□□ 1.01
COL1A2-213ENST00000620463 MYT1Q01538 1121 aa21.33■■□□□ 1
COL1A2-213ENST00000620463 SUPT5HO00267 1087 aaKnown RBP21.17■□□□□ 0.98
COL1A2-213ENST00000620463 PCGF6Q9BYE7 350 aa21.02■□□□□ 0.96
COL1A2-213ENST00000620463 CENPBP07199 599 aaPredicted RBP20.72■□□□□ 0.91
COL1A2-213ENST00000620463 HRCP23327 699 aa20.6■□□□□ 0.89
COL1A2-213ENST00000620463 SHROOM4Q9ULL8 1493 aa20.51■□□□□ 0.87
COL1A2-213ENST00000620463 ZEB1P37275 1124 aaPredicted RBP20.48■□□□□ 0.87
COL1A2-213ENST00000620463 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
COL1A2-213ENST00000620463 ERICH6Q7L0X2 663 aa20.3■□□□□ 0.84
COL1A2-213ENST00000620463 PPARGC1BQ86YN6 1023 aaKnown RBP20.23■□□□□ 0.83
COL1A2-213ENST00000620463 YTHDC1Q96MU7 727 aaKnown RBP20.15■□□□□ 0.82
COL1A2-213ENST00000620463 CCER1Q8TC90 406 aaPredicted RBP20.08■□□□□ 0.81
COL1A2-213ENST00000620463 FAM9AQ8IZU1 332 aaPredicted RBP19.92■□□□□ 0.78
COL1A2-213ENST00000620463 TTBK1Q5TCY1 1321 aaPredicted RBP19.91■□□□□ 0.78
COL1A2-213ENST00000620463 TRIM26Q12899 539 aaPredicted RBP19.88■□□□□ 0.77
COL1A2-213ENST00000620463 NEFLP07196 543 aa19.76■□□□□ 0.75
COL1A2-213ENST00000620463 GTF3C3Q9Y5Q9 886 aa19.72■□□□□ 0.75
COL1A2-213ENST00000620463 APLP2Q06481 763 aa19.65■□□□□ 0.74
COL1A2-213ENST00000620463 DIEXFQ68CQ4 756 aaKnown RBP19.5■□□□□ 0.71
COL1A2-213ENST00000620463 ACIN1Q9UKV3 1341 aaKnown RBP19.47■□□□□ 0.71
COL1A2-213ENST00000620463 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
COL1A2-213ENST00000620463 LOC105371045A0A1W2PR82 267 aa19.41■□□□□ 0.7
COL1A2-213ENST00000620463 CHIC1Q5VXU3 224 aa19.36■□□□□ 0.69
COL1A2-213ENST00000620463 SCAF1Q9H7N4 1312 aaKnown RBP19.36■□□□□ 0.69
COL1A2-213ENST00000620463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
COL1A2-213ENST00000620463 RTL5Q5HYW3 569 aaPredicted RBP19.18■□□□□ 0.66
COL1A2-213ENST00000620463 BCANQ96GW7 911 aa19.11■□□□□ 0.65
COL1A2-213ENST00000620463 NEUROD1Q13562 356 aa19.1■□□□□ 0.65
COL1A2-213ENST00000620463 RANGAP1P46060 587 aaPredicted RBP19.05■□□□□ 0.64
COL1A2-213ENST00000620463 UBTFP17480 764 aaKnown RBP19.01■□□□□ 0.63
COL1A2-213ENST00000620463 DAXXQ9UER7 740 aaPredicted RBP18.99■□□□□ 0.63
COL1A2-213ENST00000620463 HNRNPUL2Q1KMD3 747 aaKnown RBP18.9■□□□□ 0.62
COL1A2-213ENST00000620463 ZNF316A6NFI3 1004 aaPredicted RBP18.86■□□□□ 0.61
COL1A2-213ENST00000620463 EIF5BO60841 1220 aaKnown RBP18.81■□□□□ 0.6
COL1A2-213ENST00000620463 CDK11AQ9UQ88 783 aaPredicted RBP18.8■□□□□ 0.6
COL1A2-213ENST00000620463 BCL11AQ9H165 835 aa18.79■□□□□ 0.6
COL1A2-213ENST00000620463 ANP32EQ9BTT0 268 aa18.73■□□□□ 0.59
COL1A2-213ENST00000620463 CLSPNQ9HAW4 1339 aa18.68■□□□□ 0.58
COL1A2-213ENST00000620463 ITGAEP38570 1179 aa18.62■□□□□ 0.57
COL1A2-213ENST00000620463 MYT1LQ9UL68 1186 aa18.62■□□□□ 0.57
COL1A2-213ENST00000620463 ATP1B4Q9UN42 357 aaPredicted RBP18.6■□□□□ 0.57
COL1A2-213ENST00000620463 FKBP8Q14318 412 aa18.58■□□□□ 0.56
COL1A2-213ENST00000620463 DCAF1Q9Y4B6 1507 aa18.51■□□□□ 0.55
COL1A2-213ENST00000620463 CNGB1Q14028 1251 aaPredicted RBP18.51■□□□□ 0.55
COL1A2-213ENST00000620463 GLIPR1L2Q4G1C9 344 aa18.48■□□□□ 0.55
COL1A2-213ENST00000620463 ANP32AP39687 249 aaKnown RBP18.47■□□□□ 0.55
COL1A2-213ENST00000620463 ABCC9O60706 1549 aa18.47■□□□□ 0.55
COL1A2-213ENST00000620463 NBR1Q14596 966 aa18.46■□□□□ 0.55
COL1A2-213ENST00000620463 POLR3GLQ9BT43 218 aa18.45■□□□□ 0.54
COL1A2-213ENST00000620463 ANP32CO43423 234 aa18.41■□□□□ 0.54
COL1A2-213ENST00000620463 MIER1Q8N108 512 aa18.39■□□□□ 0.54
COL1A2-213ENST00000620463 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
COL1A2-213ENST00000620463 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
COL1A2-213ENST00000620463 CSRNP3Q8WYN3 585 aa18.23■□□□□ 0.51
COL1A2-213ENST00000620463 ZBTB47Q9UFB7 747 aaPredicted RBP18.2■□□□□ 0.5
COL1A2-213ENST00000620463 RTN4Q9NQC3 1192 aaKnown RBP18.16■□□□□ 0.5
COL1A2-213ENST00000620463 SUPT16HQ9Y5B9 1047 aaKnown RBP18.14■□□□□ 0.49
COL1A2-213ENST00000620463 TRIM52Q96A61 297 aa18.13■□□□□ 0.49
COL1A2-213ENST00000620463 MYO15BQ96JP2 1530 aa18.12■□□□□ 0.49
COL1A2-213ENST00000620463 HNRNPUQ00839 825 aaKnown RBP eCLIP18.08■□□□□ 0.49
COL1A2-213ENST00000620463 IRX6P78412 446 aaPredicted RBP18.05■□□□□ 0.48
COL1A2-213ENST00000620463 DEKP35659 375 aaKnown RBP18.04■□□□□ 0.48
COL1A2-213ENST00000620463 DDX10Q13206 875 aaKnown RBP18.04■□□□□ 0.48
COL1A2-213ENST00000620463 CCDC180Q9P1Z9 1646 aa17.99■□□□□ 0.47
COL1A2-213ENST00000620463 FAM50AQ14320 339 aaKnown RBP17.97■□□□□ 0.47
COL1A2-213ENST00000620463 CCDC136Q96JN2 1154 aa17.96■□□□□ 0.47
COL1A2-213ENST00000620463 TSHZ2Q9NRE2 1034 aa17.96■□□□□ 0.47
COL1A2-213ENST00000620463 RBM19Q9Y4C8 960 aaKnown RBP17.95■□□□□ 0.46
COL1A2-213ENST00000620463 ARXQ96QS3 562 aa17.93■□□□□ 0.46
COL1A2-213ENST00000620463 NEFMP07197 916 aa17.91■□□□□ 0.46
COL1A2-213ENST00000620463 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.87■□□□□ 0.45
COL1A2-213ENST00000620463 NOP58Q9Y2X3 529 aaKnown RBP17.85■□□□□ 0.45
COL1A2-213ENST00000620463 FAM9BQ8IZU0 186 aa17.84■□□□□ 0.45
COL1A2-213ENST00000620463 ANP32BQ92688 251 aaKnown RBP17.84■□□□□ 0.45
COL1A2-213ENST00000620463 ERICH6BQ5W0A0 696 aa17.82■□□□□ 0.44
COL1A2-213ENST00000620463 PRKCSHP14314 528 aaPredicted RBP17.77■□□□□ 0.44
COL1A2-213ENST00000620463 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
COL1A2-213ENST00000620463 LAS1LQ9Y4W2 734 aaKnown RBP17.75■□□□□ 0.43
COL1A2-213ENST00000620463 PPM1GO15355 546 aaPredicted RBP17.72■□□□□ 0.43
COL1A2-213ENST00000620463 NAP1L5Q96NT1 182 aaPredicted RBP17.72■□□□□ 0.43
COL1A2-213ENST00000620463 ZNF326Q5BKZ1 582 aaKnown RBP17.7■□□□□ 0.42
COL1A2-213ENST00000620463 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
COL1A2-213ENST00000620463 HIRIP3Q9BW71 556 aaPredicted RBP17.66■□□□□ 0.42
COL1A2-213ENST00000620463 DDRGK1Q96HY6 314 aa17.65■□□□□ 0.42
COL1A2-213ENST00000620463 PPP4R2Q9NY27 417 aa17.64■□□□□ 0.41
COL1A2-213ENST00000620463 UPF2Q9HAU5 1272 aaKnown RBP17.64■□□□□ 0.41
COL1A2-213ENST00000620463 MRS2Q9HD23 443 aa17.63■□□□□ 0.41
COL1A2-213ENST00000620463 HSP90AA1P07900 732 aaKnown RBP17.61■□□□□ 0.41
COL1A2-213ENST00000620463 TRIM44Q96DX7 344 aaPredicted RBP17.6■□□□□ 0.41
COL1A2-213ENST00000620463 TONSLQ96HA7 1378 aa17.6■□□□□ 0.41
COL1A2-213ENST00000620463 SALL2Q9Y467 1007 aaPredicted RBP17.6■□□□□ 0.41
COL1A2-213ENST00000620463 B4GALNT3Q6L9W6 998 aa17.58■□□□□ 0.4
COL1A2-213ENST00000620463 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
COL1A2-213ENST00000620463 TNNT2P45379 298 aaPredicted RBP17.57■□□□□ 0.4
COL1A2-213ENST00000620463 TMC1Q8TDI8 760 aa17.48■□□□□ 0.39
COL1A2-213ENST00000620463 ANO8Q9HCE9 1232 aaPredicted RBP17.48■□□□□ 0.39
COL1A2-213ENST00000620463 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms