RNA–Protein interactions for RNA: ENST00000618262.4

SRRT-216, Transcript of serrate, RNA effector molecule, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SRRT, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-216ENST00000618262 NISCHQ9Y2I1 1504 aa26.63■■□□□ 1.85
SRRT-216ENST00000618262 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
SRRT-216ENST00000618262 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.26
SRRT-216ENST00000618262 ABCC9O60706 1549 aa22.85■■□□□ 1.25
SRRT-216ENST00000618262 ZCCHC6Q5VYS8 1495 aaKnown RBP22.23■■□□□ 1.15
SRRT-216ENST00000618262 SHROOM4Q9ULL8 1493 aa22.12■■□□□ 1.13
SRRT-216ENST00000618262 NACADO15069 1562 aa21.74■■□□□ 1.07
SRRT-216ENST00000618262 RB1CC1Q8TDY2 1594 aa21.73■■□□□ 1.07
SRRT-216ENST00000618262 DCAF1Q9Y4B6 1507 aa21.7■■□□□ 1.06
SRRT-216ENST00000618262 SCRIBQ14160 1630 aa21.69■■□□□ 1.06
SRRT-216ENST00000618262 PABPN1Q86U42 306 aaKnown RBP eCLIP21.68■■□□□ 1.061e-6■■■■□ 20.3
SRRT-216ENST00000618262 MYO15BQ96JP2 1530 aa21.52■■□□□ 1.04
SRRT-216ENST00000618262 UNC13AQ9UPW8 1703 aa21.29■■□□□ 1
SRRT-216ENST00000618262 PELP1Q8IZL8 1130 aaKnown RBP21.29■■□□□ 1
SRRT-216ENST00000618262 MYT1Q01538 1121 aa21.18■□□□□ 0.98
SRRT-216ENST00000618262 BICRAQ9NZM4 1560 aa21.14■□□□□ 0.98
SRRT-216ENST00000618262 SUPT5HO00267 1087 aaKnown RBP21.08■□□□□ 0.97
SRRT-216ENST00000618262 CECR2Q9BXF3 1484 aa20.98■□□□□ 0.95
SRRT-216ENST00000618262 SLC24A1O60721 1099 aa20.76■□□□□ 0.91
SRRT-216ENST00000618262 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
SRRT-216ENST00000618262 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
SRRT-216ENST00000618262 RSF1Q96T23 1441 aaPredicted RBP20.63■□□□□ 0.89
SRRT-216ENST00000618262 EIF4G1Q04637 1599 aaKnown RBP20.59■□□□□ 0.89
SRRT-216ENST00000618262 TTBK1Q5TCY1 1321 aaPredicted RBP20.57■□□□□ 0.88
SRRT-216ENST00000618262 BAZ1AQ9NRL2 1556 aaPredicted RBP20.55■□□□□ 0.88
SRRT-216ENST00000618262 SMARCA4P51532 1647 aa20.54■□□□□ 0.88
SRRT-216ENST00000618262 WIZO95785 1651 aa20.53■□□□□ 0.88
SRRT-216ENST00000618262 CC2D2AQ9P2K1 1620 aa20.43■□□□□ 0.86
SRRT-216ENST00000618262 PRKCSHP14314 528 aaPredicted RBP20.4■□□□□ 0.86
SRRT-216ENST00000618262 ATAD2BQ9ULI0 1458 aa20.38■□□□□ 0.85
SRRT-216ENST00000618262 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
SRRT-216ENST00000618262 SMARCA2P51531 1590 aa20.21■□□□□ 0.83
SRRT-216ENST00000618262 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
SRRT-216ENST00000618262 TOP2AP11388 1531 aaKnown RBP20.1■□□□□ 0.81
SRRT-216ENST00000618262 PEG3Q9GZU2 1588 aa20.09■□□□□ 0.81
SRRT-216ENST00000618262 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.8
SRRT-216ENST00000618262 HMGXB3Q12766 1538 aa19.99■□□□□ 0.79
SRRT-216ENST00000618262 ERICH6Q7L0X2 663 aa19.95■□□□□ 0.78
SRRT-216ENST00000618262 NESP48681 1621 aa19.92■□□□□ 0.78
SRRT-216ENST00000618262 APLP2Q06481 763 aa19.92■□□□□ 0.78
SRRT-216ENST00000618262 CADPSQ9ULU8 1353 aa19.75■□□□□ 0.75
SRRT-216ENST00000618262 CHIC1Q5VXU3 224 aa19.68■□□□□ 0.74
SRRT-216ENST00000618262 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
SRRT-216ENST00000618262 CFTRP13569 1480 aa19.65■□□□□ 0.74
SRRT-216ENST00000618262 TRIM41Q8WV44 630 aa19.64■□□□□ 0.73
SRRT-216ENST00000618262 EHMT2Q96KQ7 1210 aa19.61■□□□□ 0.73
SRRT-216ENST00000618262 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
SRRT-216ENST00000618262 ERCC6Q03468 1493 aa19.57■□□□□ 0.72
SRRT-216ENST00000618262 FANCD2Q9BXW9 1451 aa19.57■□□□□ 0.72
SRRT-216ENST00000618262 DAXXQ9UER7 740 aaPredicted RBP19.54■□□□□ 0.72
SRRT-216ENST00000618262 PDS5BQ9NTI5 1447 aa19.5■□□□□ 0.71
SRRT-216ENST00000618262 LAMC3Q9Y6N6 1575 aa19.48■□□□□ 0.71
SRRT-216ENST00000618262 WRNQ14191 1432 aaPredicted RBP eCLIP19.45■□□□□ 0.76e-7■■■■■ 33.4
SRRT-216ENST00000618262 KIF21AQ7Z4S6 1674 aa19.45■□□□□ 0.7
SRRT-216ENST00000618262 CEP164Q9UPV0 1460 aa19.44■□□□□ 0.7
SRRT-216ENST00000618262 SYNJ1O43426 1573 aa19.37■□□□□ 0.69
SRRT-216ENST00000618262 BCL11AQ9H165 835 aa19.36■□□□□ 0.69
SRRT-216ENST00000618262 CUX1P39880 1505 aa19.35■□□□□ 0.69
SRRT-216ENST00000618262 URB2Q14146 1524 aaKnown RBP19.34■□□□□ 0.69
SRRT-216ENST00000618262 RAD54L2Q9Y4B4 1467 aa19.28■□□□□ 0.68
SRRT-216ENST00000618262 TOPBP1Q92547 1522 aa19.26■□□□□ 0.67
SRRT-216ENST00000618262 PRDM2Q13029 1718 aa19.25■□□□□ 0.67
SRRT-216ENST00000618262 SOGA1O94964 1423 aa19.25■□□□□ 0.67
SRRT-216ENST00000618262 MRC2Q9UBG0 1479 aa19.24■□□□□ 0.67
SRRT-216ENST00000618262 FGD5Q6ZNL6 1462 aa19.24■□□□□ 0.67
SRRT-216ENST00000618262 RUSC2Q8N2Y8 1516 aa19.23■□□□□ 0.67
SRRT-216ENST00000618262 TDRD9Q8NDG6 1382 aaKnown RBP19.2■□□□□ 0.66
SRRT-216ENST00000618262 LOC105371045A0A1W2PR82 267 aa19.2■□□□□ 0.66
SRRT-216ENST00000618262 POLA1P09884 1462 aaPredicted RBP19.18■□□□□ 0.66
SRRT-216ENST00000618262 TOP2BQ02880 1626 aa19.16■□□□□ 0.66
SRRT-216ENST00000618262 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
SRRT-216ENST00000618262 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
SRRT-216ENST00000618262 THOC2Q8NI27 1593 aaKnown RBP19.12■□□□□ 0.65
SRRT-216ENST00000618262 CUX2O14529 1486 aa19.11■□□□□ 0.65
SRRT-216ENST00000618262 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.651e-9■■■■■ 27
SRRT-216ENST00000618262 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
SRRT-216ENST00000618262 FBLN2P98095 1184 aa19.07■□□□□ 0.64
SRRT-216ENST00000618262 WDR62O43379 1518 aa19.07■□□□□ 0.64
SRRT-216ENST00000618262 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
SRRT-216ENST00000618262 HRCP23327 699 aa19■□□□□ 0.63
SRRT-216ENST00000618262 CSRNP3Q8WYN3 585 aa19■□□□□ 0.63
SRRT-216ENST00000618262 KIF27Q86VH2 1401 aa18.95■□□□□ 0.62
SRRT-216ENST00000618262 UBTFP17480 764 aaKnown RBP18.95■□□□□ 0.62
SRRT-216ENST00000618262 IFT140Q96RY7 1462 aa18.91■□□□□ 0.62
SRRT-216ENST00000618262 TARBP1Q13395 1621 aaKnown RBP18.9■□□□□ 0.62
SRRT-216ENST00000618262 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
SRRT-216ENST00000618262 EIF5BO60841 1220 aaKnown RBP18.9■□□□□ 0.62
SRRT-216ENST00000618262 ABCA10Q8WWZ4 1543 aa18.89■□□□□ 0.62
SRRT-216ENST00000618262 IGF1RP08069 1367 aa18.88■□□□□ 0.61
SRRT-216ENST00000618262 SCAF1Q9H7N4 1312 aaKnown RBP18.85■□□□□ 0.61
SRRT-216ENST00000618262 CHMP7Q8WUX9 453 aaPredicted RBP18.83■□□□□ 0.6
SRRT-216ENST00000618262 EIF4G3O43432 1585 aaKnown RBP18.82■□□□□ 0.6
SRRT-216ENST00000618262 CARMIL1Q5VZK9 1371 aa18.81■□□□□ 0.6
SRRT-216ENST00000618262 RAPGEF2Q9Y4G8 1499 aa18.8■□□□□ 0.6
SRRT-216ENST00000618262 SNAPC4Q5SXM2 1469 aa18.78■□□□□ 0.6
SRRT-216ENST00000618262 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
SRRT-216ENST00000618262 GRIN2BQ13224 1484 aa18.74■□□□□ 0.59
SRRT-216ENST00000618262 P3H3Q8IVL6 736 aa18.74■□□□□ 0.59
SRRT-216ENST00000618262 ABCA5Q8WWZ7 1642 aa18.73■□□□□ 0.59
SRRT-216ENST00000618262 EEA1Q15075 1411 aa18.71■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms