RNA–Protein interactions for RNA: ENST00000616939.4

GPN1-212, Transcript of GPN-loop GTPase 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GPN1, Length 1,832 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN1-212ENST00000616939 NISCHQ9Y2I1 1504 aa31.09■■■□□ 2.57
GPN1-212ENST00000616939 ZCCHC6Q5VYS8 1495 aaKnown RBP26.46■■□□□ 1.83
GPN1-212ENST00000616939 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
GPN1-212ENST00000616939 CCDC180Q9P1Z9 1646 aa26.44■■□□□ 1.82
GPN1-212ENST00000616939 SUPT5HO00267 1087 aaKnown RBP26.16■■□□□ 1.78
GPN1-212ENST00000616939 HRCP23327 699 aa26.1■■□□□ 1.77
GPN1-212ENST00000616939 MYO15BQ96JP2 1530 aa26.01■■□□□ 1.75
GPN1-212ENST00000616939 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
GPN1-212ENST00000616939 DCAF1Q9Y4B6 1507 aa25.72■■□□□ 1.71
GPN1-212ENST00000616939 PCGF6Q9BYE7 350 aa25.49■■□□□ 1.67
GPN1-212ENST00000616939 PPARGC1BQ86YN6 1023 aaKnown RBP25.19■■□□□ 1.62
GPN1-212ENST00000616939 ABCC9O60706 1549 aa25.13■■□□□ 1.61
GPN1-212ENST00000616939 TRIM26Q12899 539 aaPredicted RBP25.09■■□□□ 1.61
GPN1-212ENST00000616939 DCAF8L2P0C7V8 631 aa25.02■■□□□ 1.6
GPN1-212ENST00000616939 LOC105371045A0A1W2PR82 267 aa24.97■■□□□ 1.59
GPN1-212ENST00000616939 ZEB1P37275 1124 aaPredicted RBP24.93■■□□□ 1.58
GPN1-212ENST00000616939 PELP1Q8IZL8 1130 aaKnown RBP24.77■■□□□ 1.56
GPN1-212ENST00000616939 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
GPN1-212ENST00000616939 RB1CC1Q8TDY2 1594 aa24.69■■□□□ 1.54
GPN1-212ENST00000616939 SCRIBQ14160 1630 aa24.53■■□□□ 1.52
GPN1-212ENST00000616939 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
GPN1-212ENST00000616939 SCAF1Q9H7N4 1312 aaKnown RBP24.28■■□□□ 1.48
GPN1-212ENST00000616939 NACADO15069 1562 aa24.19■■□□□ 1.46
GPN1-212ENST00000616939 EIF4G1Q04637 1599 aaKnown RBP24.17■■□□□ 1.46
GPN1-212ENST00000616939 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
GPN1-212ENST00000616939 BAZ1AQ9NRL2 1556 aaPredicted RBP24.1■■□□□ 1.45
GPN1-212ENST00000616939 FAM9AQ8IZU1 332 aaPredicted RBP24.08■■□□□ 1.45
GPN1-212ENST00000616939 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
GPN1-212ENST00000616939 WIZO95785 1651 aa24.04■■□□□ 1.44
GPN1-212ENST00000616939 WRNQ14191 1432 aaPredicted RBP eCLIP23.98■■□□□ 1.43
GPN1-212ENST00000616939 ACIN1Q9UKV3 1341 aaKnown RBP23.97■■□□□ 1.43
GPN1-212ENST00000616939 CCER1Q8TC90 406 aaPredicted RBP23.82■■□□□ 1.4
GPN1-212ENST00000616939 TOP2AP11388 1531 aaKnown RBP23.79■■□□□ 1.4
GPN1-212ENST00000616939 CENPBP07199 599 aaPredicted RBP23.78■■□□□ 1.4
GPN1-212ENST00000616939 MYT1Q01538 1121 aa23.78■■□□□ 1.4
GPN1-212ENST00000616939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.77■■□□□ 1.4
GPN1-212ENST00000616939 NEUROD1Q13562 356 aa23.76■■□□□ 1.39
GPN1-212ENST00000616939 DIEXFQ68CQ4 756 aaKnown RBP23.71■■□□□ 1.39
GPN1-212ENST00000616939 EEA1Q15075 1411 aa23.7■■□□□ 1.39
GPN1-212ENST00000616939 CEP162Q5TB80 1403 aa23.68■■□□□ 1.38
GPN1-212ENST00000616939 TNIKQ9UKE5 1360 aa23.68■■□□□ 1.38
GPN1-212ENST00000616939 EHMT2Q96KQ7 1210 aa23.68■■□□□ 1.38
GPN1-212ENST00000616939 SMARCA2P51531 1590 aa23.63■■□□□ 1.37
GPN1-212ENST00000616939 SMARCA4P51532 1647 aa23.62■■□□□ 1.37
GPN1-212ENST00000616939 ABCC8Q09428 1581 aa23.6■■□□□ 1.37
GPN1-212ENST00000616939 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
GPN1-212ENST00000616939 GTF3C3Q9Y5Q9 886 aa23.57■■□□□ 1.36
GPN1-212ENST00000616939 ZNF316A6NFI3 1004 aaPredicted RBP23.47■■□□□ 1.35
GPN1-212ENST00000616939 GOLGA3Q08378 1498 aa23.47■■□□□ 1.35
GPN1-212ENST00000616939 SOGA1O94964 1423 aa23.43■■□□□ 1.34
GPN1-212ENST00000616939 KIF21BO75037 1637 aa23.39■■□□□ 1.33
GPN1-212ENST00000616939 UNC13AQ9UPW8 1703 aa23.37■■□□□ 1.33
GPN1-212ENST00000616939 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
GPN1-212ENST00000616939 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
GPN1-212ENST00000616939 RUSC2Q8N2Y8 1516 aa23.28■■□□□ 1.32
GPN1-212ENST00000616939 PEG3Q9GZU2 1588 aa23.25■■□□□ 1.31
GPN1-212ENST00000616939 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
GPN1-212ENST00000616939 UBTFP17480 764 aaKnown RBP23.17■■□□□ 1.3
GPN1-212ENST00000616939 VPS8Q8N3P4 1428 aa23.17■■□□□ 1.3
GPN1-212ENST00000616939 TTBK1Q5TCY1 1321 aaPredicted RBP23.13■■□□□ 1.29
GPN1-212ENST00000616939 SYNJ1O43426 1573 aa23.13■■□□□ 1.29
GPN1-212ENST00000616939 CLIP1P30622 1438 aa23.12■■□□□ 1.29
GPN1-212ENST00000616939 CLSPNQ9HAW4 1339 aa23.11■■□□□ 1.29
GPN1-212ENST00000616939 MIER1Q8N108 512 aa23.08■■□□□ 1.29
GPN1-212ENST00000616939 YTHDC1Q96MU7 727 aaKnown RBP22.97■■□□□ 1.27
GPN1-212ENST00000616939 BICRAQ9NZM4 1560 aa22.95■■□□□ 1.26
GPN1-212ENST00000616939 HNRNPUL2Q1KMD3 747 aaKnown RBP22.94■■□□□ 1.26
GPN1-212ENST00000616939 ERICH3Q5RHP9 1530 aa22.91■■□□□ 1.26
GPN1-212ENST00000616939 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
GPN1-212ENST00000616939 TOP2BQ02880 1626 aa22.89■■□□□ 1.26
GPN1-212ENST00000616939 BIVM-ERCC5R4GMW8 1640 aa22.88■■□□□ 1.25
GPN1-212ENST00000616939 APLP2Q06481 763 aa22.85■■□□□ 1.25
GPN1-212ENST00000616939 DHX57Q6P158 1386 aaKnown RBP22.84■■□□□ 1.25
GPN1-212ENST00000616939 CUX2O14529 1486 aa22.82■■□□□ 1.24
GPN1-212ENST00000616939 ATAD2BQ9ULI0 1458 aa22.78■■□□□ 1.24
GPN1-212ENST00000616939 ARAP1Q96P48 1450 aa22.76■■□□□ 1.23
GPN1-212ENST00000616939 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
GPN1-212ENST00000616939 PRXQ9BXM0 1461 aa22.74■■□□□ 1.23
GPN1-212ENST00000616939 SUPT16HQ9Y5B9 1047 aaKnown RBP22.66■■□□□ 1.22
GPN1-212ENST00000616939 MAP3K1Q13233 1512 aa22.52■■□□□ 1.2
GPN1-212ENST00000616939 CCNB3Q8WWL7 1395 aa22.5■■□□□ 1.19
GPN1-212ENST00000616939 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.19
GPN1-212ENST00000616939 PABPN1Q86U42 306 aaKnown RBP eCLIP22.45■■□□□ 1.19
GPN1-212ENST00000616939 MAPKBP1O60336 1514 aa22.45■■□□□ 1.18
GPN1-212ENST00000616939 CUX1P39880 1505 aa22.45■■□□□ 1.18
GPN1-212ENST00000616939 HMGXB3Q12766 1538 aa22.45■■□□□ 1.18
GPN1-212ENST00000616939 KIF27Q86VH2 1401 aa22.45■■□□□ 1.18
GPN1-212ENST00000616939 TSHZ2Q9NRE2 1034 aa22.45■■□□□ 1.18
GPN1-212ENST00000616939 ARHGAP35Q9NRY4 1499 aa22.44■■□□□ 1.18
GPN1-212ENST00000616939 PRDM2Q13029 1718 aa22.4■■□□□ 1.18
GPN1-212ENST00000616939 TIAM1Q13009 1591 aa22.4■■□□□ 1.18
GPN1-212ENST00000616939 ANP32EQ9BTT0 268 aa22.35■■□□□ 1.17
GPN1-212ENST00000616939 CFAP43Q8NDM7 1665 aa22.32■■□□□ 1.16
GPN1-212ENST00000616939 RAB3GAP2Q9H2M9 1393 aa22.32■■□□□ 1.16
GPN1-212ENST00000616939 RANGAP1P46060 587 aaPredicted RBP22.31■■□□□ 1.16
GPN1-212ENST00000616939 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
GPN1-212ENST00000616939 SETD5Q9C0A6 1442 aa22.28■■□□□ 1.16
GPN1-212ENST00000616939 TIMELESSQ9UNS1 1208 aa22.27■■□□□ 1.15
GPN1-212ENST00000616939 CFTRP13569 1480 aa22.25■■□□□ 1.15
GPN1-212ENST00000616939 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms