RNA–Protein interactions for RNA: ENST00000614944.4

VPS11-206, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 2 BASIC

Gene VPS11, Length 3,388 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-206ENST00000614944 NISCHQ9Y2I1 1504 aa19.88■□□□□ 0.77
VPS11-206ENST00000614944 CCDC180Q9P1Z9 1646 aa17.61■□□□□ 0.41
VPS11-206ENST00000614944 ZCCHC6Q5VYS8 1495 aaKnown RBP16.72■□□□□ 0.27
VPS11-206ENST00000614944 DCAF1Q9Y4B6 1507 aa16.67■□□□□ 0.26
VPS11-206ENST00000614944 MYO15BQ96JP2 1530 aa16.56■□□□□ 0.24
VPS11-206ENST00000614944 NACADO15069 1562 aa16.33■□□□□ 0.2
VPS11-206ENST00000614944 ABCC9O60706 1549 aa16.27■□□□□ 0.19
VPS11-206ENST00000614944 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
VPS11-206ENST00000614944 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
VPS11-206ENST00000614944 UNC13AQ9UPW8 1703 aa15.83■□□□□ 0.12
VPS11-206ENST00000614944 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
VPS11-206ENST00000614944 SHROOM4Q9ULL8 1493 aa15.74■□□□□ 0.11
VPS11-206ENST00000614944 BICRAQ9NZM4 1560 aa15.64■□□□□ 0.09
VPS11-206ENST00000614944 PELP1Q8IZL8 1130 aaKnown RBP15.53■□□□□ 0.08
VPS11-206ENST00000614944 BAZ1AQ9NRL2 1556 aaPredicted RBP15.39■□□□□ 0.05
VPS11-206ENST00000614944 MYT1Q01538 1121 aa15.35■□□□□ 0.05
VPS11-206ENST00000614944 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
VPS11-206ENST00000614944 PEG3Q9GZU2 1588 aa15.3■□□□□ 0.04
VPS11-206ENST00000614944 RSF1Q96T23 1441 aaPredicted RBP15.28■□□□□ 0.04
VPS11-206ENST00000614944 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.04
VPS11-206ENST00000614944 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
VPS11-206ENST00000614944 PABPN1Q86U42 306 aaKnown RBP eCLIP15.17■□□□□ 0.02
VPS11-206ENST00000614944 EIF4G1Q04637 1599 aaKnown RBP15.14■□□□□ 0.01
VPS11-206ENST00000614944 SMARCA2P51531 1590 aa15.13■□□□□ 0.01
VPS11-206ENST00000614944 WIZO95785 1651 aa15.12■□□□□ 0.01
VPS11-206ENST00000614944 TOP2AP11388 1531 aaKnown RBP15.1■□□□□ 0.01
VPS11-206ENST00000614944 HMGXB3Q12766 1538 aa15.05■□□□□ 0
VPS11-206ENST00000614944 ATAD2BQ9ULI0 1458 aa15.03■□□□□ -0
VPS11-206ENST00000614944 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
VPS11-206ENST00000614944 SUPT5HO00267 1087 aaKnown RBP14.98□□□□□ -0.01
VPS11-206ENST00000614944 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
VPS11-206ENST00000614944 CC2D2AQ9P2K1 1620 aa14.9□□□□□ -0.02
VPS11-206ENST00000614944 CCDC88BA6NC98 1476 aa14.81□□□□□ -0.04
VPS11-206ENST00000614944 TTBK1Q5TCY1 1321 aaPredicted RBP14.79□□□□□ -0.04
VPS11-206ENST00000614944 PRDM2Q13029 1718 aa14.73□□□□□ -0.05
VPS11-206ENST00000614944 CFTRP13569 1480 aa14.61□□□□□ -0.07
VPS11-206ENST00000614944 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
VPS11-206ENST00000614944 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
VPS11-206ENST00000614944 CHIC1Q5VXU3 224 aa14.5□□□□□ -0.09
VPS11-206ENST00000614944 BIVM-ERCC5R4GMW8 1640 aa14.46□□□□□ -0.09
VPS11-206ENST00000614944 PRKCSHP14314 528 aaPredicted RBP14.42□□□□□ -0.1
VPS11-206ENST00000614944 TOP2BQ02880 1626 aa14.41□□□□□ -0.1
VPS11-206ENST00000614944 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
VPS11-206ENST00000614944 ABCC8Q09428 1581 aa14.36□□□□□ -0.11
VPS11-206ENST00000614944 SYNJ1O43426 1573 aa14.35□□□□□ -0.11
VPS11-206ENST00000614944 DNAJC5BQ9UF47 199 aa14.34□□□□□ -0.11
VPS11-206ENST00000614944 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.12
VPS11-206ENST00000614944 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
VPS11-206ENST00000614944 DNMBPQ6XZF7 1577 aa14.3□□□□□ -0.12
VPS11-206ENST00000614944 CUX1P39880 1505 aa14.3□□□□□ -0.12
VPS11-206ENST00000614944 EEA1Q15075 1411 aa14.28□□□□□ -0.12
VPS11-206ENST00000614944 CEP164Q9UPV0 1460 aa14.28□□□□□ -0.12
VPS11-206ENST00000614944 KIF21AQ7Z4S6 1674 aa14.27□□□□□ -0.13
VPS11-206ENST00000614944 NESP48681 1621 aa14.27□□□□□ -0.13
VPS11-206ENST00000614944 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
VPS11-206ENST00000614944 ERICH6Q7L0X2 663 aa14.2□□□□□ -0.14
VPS11-206ENST00000614944 SLC24A1O60721 1099 aa14.2□□□□□ -0.14
VPS11-206ENST00000614944 TOPBP1Q92547 1522 aa14.19□□□□□ -0.14
VPS11-206ENST00000614944 WDR97A6NE52 1622 aa14.18□□□□□ -0.14
VPS11-206ENST00000614944 WDR62O43379 1518 aa14.18□□□□□ -0.14
VPS11-206ENST00000614944 MRC2Q9UBG0 1479 aa14.17□□□□□ -0.14
VPS11-206ENST00000614944 URB2Q14146 1524 aaKnown RBP14.17□□□□□ -0.14
VPS11-206ENST00000614944 THOC2Q8NI27 1593 aaKnown RBP14.14□□□□□ -0.15
VPS11-206ENST00000614944 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
VPS11-206ENST00000614944 ABCA10Q8WWZ4 1543 aa14.11□□□□□ -0.15
VPS11-206ENST00000614944 KIF21BO75037 1637 aa14.1□□□□□ -0.15
VPS11-206ENST00000614944 APLP2Q06481 763 aa14.1□□□□□ -0.15
VPS11-206ENST00000614944 HRCP23327 699 aa14.1□□□□□ -0.15
VPS11-206ENST00000614944 POLA1P09884 1462 aaPredicted RBP14.09□□□□□ -0.15
VPS11-206ENST00000614944 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.16
VPS11-206ENST00000614944 ABCA5Q8WWZ7 1642 aa14.05□□□□□ -0.16
VPS11-206ENST00000614944 SOGA1O94964 1423 aa14.04□□□□□ -0.16
VPS11-206ENST00000614944 KIF27Q86VH2 1401 aa14.04□□□□□ -0.16
VPS11-206ENST00000614944 ERICH3Q5RHP9 1530 aa14.04□□□□□ -0.16
VPS11-206ENST00000614944 IFT140Q96RY7 1462 aa14.01□□□□□ -0.17
VPS11-206ENST00000614944 CUL7Q14999 1698 aa14□□□□□ -0.17
VPS11-206ENST00000614944 BCL11AQ9H165 835 aa14□□□□□ -0.17
VPS11-206ENST00000614944 ERCC6Q03468 1493 aa14□□□□□ -0.17
VPS11-206ENST00000614944 PRXQ9BXM0 1461 aa13.99□□□□□ -0.17
VPS11-206ENST00000614944 CUX2O14529 1486 aa13.98□□□□□ -0.17
VPS11-206ENST00000614944 RUSC2Q8N2Y8 1516 aa13.98□□□□□ -0.17
VPS11-206ENST00000614944 CSRNP3Q8WYN3 585 aa13.96□□□□□ -0.18
VPS11-206ENST00000614944 GOLGA3Q08378 1498 aa13.95□□□□□ -0.18
VPS11-206ENST00000614944 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
VPS11-206ENST00000614944 PBRM1Q86U86 1689 aa13.93□□□□□ -0.18
VPS11-206ENST00000614944 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
VPS11-206ENST00000614944 IGF1RP08069 1367 aa13.89□□□□□ -0.19
VPS11-206ENST00000614944 TNIKQ9UKE5 1360 aa13.89□□□□□ -0.19
VPS11-206ENST00000614944 GAPVD1Q14C86 1478 aa13.88□□□□□ -0.19
VPS11-206ENST00000614944 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
VPS11-206ENST00000614944 EIF4G3O43432 1585 aaKnown RBP13.85□□□□□ -0.19
VPS11-206ENST00000614944 GRIN2BQ13224 1484 aa13.84□□□□□ -0.19
VPS11-206ENST00000614944 ADAMTS12P58397 1594 aa13.84□□□□□ -0.19
VPS11-206ENST00000614944 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
VPS11-206ENST00000614944 CTTNBP2Q8WZ74 1663 aa13.8□□□□□ -0.2
VPS11-206ENST00000614944 CARMIL1Q5VZK9 1371 aa13.8□□□□□ -0.2
VPS11-206ENST00000614944 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
VPS11-206ENST00000614944 FHAD1B1AJZ9 1412 aa13.79□□□□□ -0.2
VPS11-206ENST00000614944 ZNF608Q9ULD9 1512 aaPredicted RBP13.75□□□□□ -0.21
VPS11-206ENST00000614944 LOC105371045A0A1W2PR82 267 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms