RNA–Protein interactions for RNA: ENST00000613098.4

PPARGC1A-217, Transcript of PPARG coactivator 1 alpha, humanhuman

TSL 1 (best) BASIC

Gene PPARGC1A, Length 3,210 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPARGC1A-217ENST00000613098 NISCHQ9Y2I1 1504 aa15.24■□□□□ 0.03
PPARGC1A-217ENST00000613098 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.28
PPARGC1A-217ENST00000613098 SHROOM4Q9ULL8 1493 aa13.07□□□□□ -0.32
PPARGC1A-217ENST00000613098 ZCCHC6Q5VYS8 1495 aaKnown RBP12.95□□□□□ -0.34
PPARGC1A-217ENST00000613098 SUPT5HO00267 1087 aaKnown RBP12.85□□□□□ -0.35
PPARGC1A-217ENST00000613098 MYO15BQ96JP2 1530 aa12.78□□□□□ -0.36
PPARGC1A-217ENST00000613098 CHIC1Q5VXU3 224 aa12.67□□□□□ -0.38
PPARGC1A-217ENST00000613098 HRCP23327 699 aa12.54□□□□□ -0.4
PPARGC1A-217ENST00000613098 ABCC9O60706 1549 aa12.5□□□□□ -0.41
PPARGC1A-217ENST00000613098 DCAF1Q9Y4B6 1507 aa12.5□□□□□ -0.41
PPARGC1A-217ENST00000613098 RB1CC1Q8TDY2 1594 aa12.49□□□□□ -0.41
PPARGC1A-217ENST00000613098 NACADO15069 1562 aa12.43□□□□□ -0.42
PPARGC1A-217ENST00000613098 DCAF8L2P0C7V8 631 aa12.41□□□□□ -0.42
PPARGC1A-217ENST00000613098 PCGF6Q9BYE7 350 aa12.38□□□□□ -0.43
PPARGC1A-217ENST00000613098 PPARGC1BQ86YN6 1023 aaKnown RBP12.32□□□□□ -0.44
PPARGC1A-217ENST00000613098 LOC105371045A0A1W2PR82 267 aa12.32□□□□□ -0.44
PPARGC1A-217ENST00000613098 UNC13AQ9UPW8 1703 aa12.24□□□□□ -0.45
PPARGC1A-217ENST00000613098 RSF1Q96T23 1441 aaPredicted RBP12.16□□□□□ -0.46
PPARGC1A-217ENST00000613098 DNAJC5BQ9UF47 199 aa12.13□□□□□ -0.47
PPARGC1A-217ENST00000613098 BICRAQ9NZM4 1560 aa12.09□□□□□ -0.47
PPARGC1A-217ENST00000613098 TRIM26Q12899 539 aaPredicted RBP12.08□□□□□ -0.48
PPARGC1A-217ENST00000613098 SCRIBQ14160 1630 aa12.07□□□□□ -0.48
PPARGC1A-217ENST00000613098 DNAJC5Q9H3Z4 198 aa12.05□□□□□ -0.48
PPARGC1A-217ENST00000613098 CUX2O14529 1486 aa11.96□□□□□ -0.5
PPARGC1A-217ENST00000613098 CECR2Q9BXF3 1484 aa11.94□□□□□ -0.5
PPARGC1A-217ENST00000613098 TRIM41Q8WV44 630 aa11.92□□□□□ -0.5
PPARGC1A-217ENST00000613098 MROH2BQ7Z745 1585 aa11.9□□□□□ -0.5
PPARGC1A-217ENST00000613098 FAM9AQ8IZU1 332 aaPredicted RBP11.86□□□□□ -0.51
PPARGC1A-217ENST00000613098 EIF4G1Q04637 1599 aaKnown RBP11.84□□□□□ -0.51
PPARGC1A-217ENST00000613098 WIZO95785 1651 aa11.83□□□□□ -0.52
PPARGC1A-217ENST00000613098 CC2D2AQ9P2K1 1620 aa11.8□□□□□ -0.52
PPARGC1A-217ENST00000613098 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
PPARGC1A-217ENST00000613098 EHMT2Q96KQ7 1210 aa11.75□□□□□ -0.53
PPARGC1A-217ENST00000613098 BAZ1AQ9NRL2 1556 aaPredicted RBP11.74□□□□□ -0.53
PPARGC1A-217ENST00000613098 SCAF1Q9H7N4 1312 aaKnown RBP11.71□□□□□ -0.53
PPARGC1A-217ENST00000613098 CCDC88BA6NC98 1476 aa11.63□□□□□ -0.55
PPARGC1A-217ENST00000613098 ABCC8Q09428 1581 aa11.62□□□□□ -0.55
PPARGC1A-217ENST00000613098 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.61□□□□□ -0.55
PPARGC1A-217ENST00000613098 TOP2AP11388 1531 aaKnown RBP11.6□□□□□ -0.55
PPARGC1A-217ENST00000613098 WRNQ14191 1432 aaPredicted RBP eCLIP11.59□□□□□ -0.55
PPARGC1A-217ENST00000613098 SMARCA2P51531 1590 aa11.59□□□□□ -0.55
PPARGC1A-217ENST00000613098 SMARCA4P51532 1647 aa11.56□□□□□ -0.56
PPARGC1A-217ENST00000613098 SOGA1O94964 1423 aa11.56□□□□□ -0.56
PPARGC1A-217ENST00000613098 RUSC2Q8N2Y8 1516 aa11.54□□□□□ -0.56
PPARGC1A-217ENST00000613098 CEP162Q5TB80 1403 aa11.52□□□□□ -0.57
PPARGC1A-217ENST00000613098 NEUROD1Q13562 356 aa11.49□□□□□ -0.57
PPARGC1A-217ENST00000613098 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
PPARGC1A-217ENST00000613098 CCER1Q8TC90 406 aaPredicted RBP11.48□□□□□ -0.57
PPARGC1A-217ENST00000613098 ACIN1Q9UKV3 1341 aaKnown RBP11.46□□□□□ -0.57
PPARGC1A-217ENST00000613098 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
PPARGC1A-217ENST00000613098 DIEXFQ68CQ4 756 aaKnown RBP11.41□□□□□ -0.58
PPARGC1A-217ENST00000613098 CSRNP3Q8WYN3 585 aa11.41□□□□□ -0.58
PPARGC1A-217ENST00000613098 TTBK1Q5TCY1 1321 aaPredicted RBP11.41□□□□□ -0.58
PPARGC1A-217ENST00000613098 EEA1Q15075 1411 aa11.39□□□□□ -0.59
PPARGC1A-217ENST00000613098 THOC2Q8NI27 1593 aaKnown RBP11.38□□□□□ -0.59
PPARGC1A-217ENST00000613098 PEG3Q9GZU2 1588 aa11.37□□□□□ -0.59
PPARGC1A-217ENST00000613098 HMGXB3Q12766 1538 aa11.37□□□□□ -0.59
PPARGC1A-217ENST00000613098 SYNJ1O43426 1573 aa11.36□□□□□ -0.59
PPARGC1A-217ENST00000613098 GOLGA3Q08378 1498 aa11.35□□□□□ -0.59
PPARGC1A-217ENST00000613098 GTF3C3Q9Y5Q9 886 aa11.32□□□□□ -0.6
PPARGC1A-217ENST00000613098 KIF21BO75037 1637 aa11.31□□□□□ -0.6
PPARGC1A-217ENST00000613098 NCAPD3P42695 1498 aa11.3□□□□□ -0.6
PPARGC1A-217ENST00000613098 UBTFP17480 764 aaKnown RBP11.3□□□□□ -0.6
PPARGC1A-217ENST00000613098 ZNF316A6NFI3 1004 aaPredicted RBP11.28□□□□□ -0.6
PPARGC1A-217ENST00000613098 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
PPARGC1A-217ENST00000613098 CEP164Q9UPV0 1460 aa11.27□□□□□ -0.61
PPARGC1A-217ENST00000613098 CLIP1P30622 1438 aa11.26□□□□□ -0.61
PPARGC1A-217ENST00000613098 LAMC3Q9Y6N6 1575 aa11.26□□□□□ -0.61
PPARGC1A-217ENST00000613098 RAPGEF2Q9Y4G8 1499 aa11.25□□□□□ -0.61
PPARGC1A-217ENST00000613098 VPS8Q8N3P4 1428 aa11.23□□□□□ -0.61
PPARGC1A-217ENST00000613098 ATAD2BQ9ULI0 1458 aa11.23□□□□□ -0.61
PPARGC1A-217ENST00000613098 MIER1Q8N108 512 aa11.21□□□□□ -0.61
PPARGC1A-217ENST00000613098 BAZ1BQ9UIG0 1483 aaKnown RBP11.21□□□□□ -0.62
PPARGC1A-217ENST00000613098 CENPBP07199 599 aaPredicted RBP11.2□□□□□ -0.62
PPARGC1A-217ENST00000613098 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
PPARGC1A-217ENST00000613098 TOP2BQ02880 1626 aa11.16□□□□□ -0.62
PPARGC1A-217ENST00000613098 ARAP1Q96P48 1450 aa11.13□□□□□ -0.63
PPARGC1A-217ENST00000613098 PRXQ9BXM0 1461 aa11.13□□□□□ -0.63
PPARGC1A-217ENST00000613098 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
PPARGC1A-217ENST00000613098 WDR62O43379 1518 aa11.11□□□□□ -0.63
PPARGC1A-217ENST00000613098 YTHDC1Q96MU7 727 aaKnown RBP11.11□□□□□ -0.63
PPARGC1A-217ENST00000613098 DHX57Q6P158 1386 aaKnown RBP11.11□□□□□ -0.63
PPARGC1A-217ENST00000613098 KANK4Q5T7N3 995 aaPredicted RBP11.09□□□□□ -0.63
PPARGC1A-217ENST00000613098 ERICH3Q5RHP9 1530 aa11.08□□□□□ -0.64
PPARGC1A-217ENST00000613098 CUX1P39880 1505 aa11.05□□□□□ -0.64
PPARGC1A-217ENST00000613098 RANGAP1P46060 587 aaPredicted RBP11.05□□□□□ -0.64
PPARGC1A-217ENST00000613098 RRBP1Q9P2E9 1410 aaKnown RBP11.04□□□□□ -0.64
PPARGC1A-217ENST00000613098 CLSPNQ9HAW4 1339 aa11.02□□□□□ -0.65
PPARGC1A-217ENST00000613098 ARHGAP35Q9NRY4 1499 aa10.99□□□□□ -0.65
PPARGC1A-217ENST00000613098 WDR97A6NE52 1622 aa10.98□□□□□ -0.65
PPARGC1A-217ENST00000613098 APLP2Q06481 763 aa10.97□□□□□ -0.65
PPARGC1A-217ENST00000613098 PRDM2Q13029 1718 aa10.96□□□□□ -0.65
PPARGC1A-217ENST00000613098 MAPKBP1O60336 1514 aa10.95□□□□□ -0.66
PPARGC1A-217ENST00000613098 CFTRP13569 1480 aa10.95□□□□□ -0.66
PPARGC1A-217ENST00000613098 ERCC6Q03468 1493 aa10.95□□□□□ -0.66
PPARGC1A-217ENST00000613098 KIF21AQ7Z4S6 1674 aa10.94□□□□□ -0.66
PPARGC1A-217ENST00000613098 KIF27Q86VH2 1401 aa10.92□□□□□ -0.66
PPARGC1A-217ENST00000613098 CCNB3Q8WWL7 1395 aa10.92□□□□□ -0.66
PPARGC1A-217ENST00000613098 SUPT16HQ9Y5B9 1047 aaKnown RBP10.9□□□□□ -0.66
PPARGC1A-217ENST00000613098 KCNH8Q96L42 1107 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms