RNA–Protein interactions for RNA: ENST00000599227.5

ZNF544-213, Transcript of zinc finger protein 544, humanhuman

TSL 1 (best) BASIC

Gene ZNF544, Length 3,587 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544-213ENST00000599227 NISCHQ9Y2I1 1504 aa21.71■■□□□ 1.07
ZNF544-213ENST00000599227 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.84
ZNF544-213ENST00000599227 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
ZNF544-213ENST00000599227 SUPT5HO00267 1087 aaKnown RBP19.8■□□□□ 0.76
ZNF544-213ENST00000599227 EHMT2Q96KQ7 1210 aa19.22■□□□□ 0.67
ZNF544-213ENST00000599227 FAM9AQ8IZU1 332 aaPredicted RBP18.65■□□□□ 0.58
ZNF544-213ENST00000599227 PCGF6Q9BYE7 350 aa18.61■□□□□ 0.57
ZNF544-213ENST00000599227 CHIC1Q5VXU3 224 aa18.55■□□□□ 0.56
ZNF544-213ENST00000599227 TTBK1Q5TCY1 1321 aaPredicted RBP18.42■□□□□ 0.54
ZNF544-213ENST00000599227 LOC105371045A0A1W2PR82 267 aa18.41■□□□□ 0.54
ZNF544-213ENST00000599227 PPARGC1BQ86YN6 1023 aaKnown RBP18.37■□□□□ 0.53
ZNF544-213ENST00000599227 MYO15BQ96JP2 1530 aa18.37■□□□□ 0.53
ZNF544-213ENST00000599227 HRCP23327 699 aa18.3■□□□□ 0.52
ZNF544-213ENST00000599227 ZCCHC6Q5VYS8 1495 aaKnown RBP18.28■□□□□ 0.52
ZNF544-213ENST00000599227 RANGAP1P46060 587 aaPredicted RBP18.05■□□□□ 0.48
ZNF544-213ENST00000599227 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
ZNF544-213ENST00000599227 CCDC180Q9P1Z9 1646 aa17.88■□□□□ 0.45
ZNF544-213ENST00000599227 ABCC9O60706 1549 aa17.8■□□□□ 0.44
ZNF544-213ENST00000599227 TRIM26Q12899 539 aaPredicted RBP17.79■□□□□ 0.44
ZNF544-213ENST00000599227 PABPN1Q86U42 306 aaKnown RBP eCLIP17.69■□□□□ 0.42
ZNF544-213ENST00000599227 AEBP2Q6ZN18 517 aaPredicted RBP17.62■□□□□ 0.41
ZNF544-213ENST00000599227 SCRIBQ14160 1630 aa17.57■□□□□ 0.4
ZNF544-213ENST00000599227 DCAF1Q9Y4B6 1507 aa17.55■□□□□ 0.4
ZNF544-213ENST00000599227 UBTFP17480 764 aaKnown RBP17.47■□□□□ 0.39
ZNF544-213ENST00000599227 RSF1Q96T23 1441 aaPredicted RBP17.45■□□□□ 0.38
ZNF544-213ENST00000599227 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
ZNF544-213ENST00000599227 CCER1Q8TC90 406 aaPredicted RBP17.39■□□□□ 0.37
ZNF544-213ENST00000599227 ZEB1P37275 1124 aaPredicted RBP17.35■□□□□ 0.37
ZNF544-213ENST00000599227 RB1CC1Q8TDY2 1594 aa17.29■□□□□ 0.36
ZNF544-213ENST00000599227 CECR2Q9BXF3 1484 aa17.27■□□□□ 0.36
ZNF544-213ENST00000599227 ATP1B4Q9UN42 357 aaPredicted RBP17.24■□□□□ 0.35
ZNF544-213ENST00000599227 HNRNPUL2Q1KMD3 747 aaKnown RBP17.2■□□□□ 0.34
ZNF544-213ENST00000599227 YTHDC1Q96MU7 727 aaKnown RBP17.17■□□□□ 0.34
ZNF544-213ENST00000599227 ITGAEP38570 1179 aa17.16■□□□□ 0.34
ZNF544-213ENST00000599227 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
ZNF544-213ENST00000599227 APLP2Q06481 763 aa17.11■□□□□ 0.33
ZNF544-213ENST00000599227 MROH2BQ7Z745 1585 aa17.08■□□□□ 0.32
ZNF544-213ENST00000599227 DIEXFQ68CQ4 756 aaKnown RBP16.99■□□□□ 0.31
ZNF544-213ENST00000599227 WIZO95785 1651 aa16.97■□□□□ 0.31
ZNF544-213ENST00000599227 NEUROD1Q13562 356 aa16.94■□□□□ 0.3
ZNF544-213ENST00000599227 ABCC8Q09428 1581 aa16.89■□□□□ 0.29
ZNF544-213ENST00000599227 GTF3C3Q9Y5Q9 886 aa16.88■□□□□ 0.29
ZNF544-213ENST00000599227 CSRNP3Q8WYN3 585 aa16.84■□□□□ 0.29
ZNF544-213ENST00000599227 SOGA1O94964 1423 aa16.84■□□□□ 0.29
ZNF544-213ENST00000599227 ACIN1Q9UKV3 1341 aaKnown RBP16.83■□□□□ 0.29
ZNF544-213ENST00000599227 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.28
ZNF544-213ENST00000599227 CENPBP07199 599 aaPredicted RBP16.82■□□□□ 0.28
ZNF544-213ENST00000599227 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
ZNF544-213ENST00000599227 CEP162Q5TB80 1403 aa16.76■□□□□ 0.27
ZNF544-213ENST00000599227 NACADO15069 1562 aa16.75■□□□□ 0.27
ZNF544-213ENST00000599227 RUSC2Q8N2Y8 1516 aa16.74■□□□□ 0.27
ZNF544-213ENST00000599227 CNGB1Q14028 1251 aaPredicted RBP16.74■□□□□ 0.27
ZNF544-213ENST00000599227 ARID3CA6NKF2 412 aa16.72■□□□□ 0.27
ZNF544-213ENST00000599227 ZNF316A6NFI3 1004 aaPredicted RBP16.67■□□□□ 0.26
ZNF544-213ENST00000599227 PELP1Q8IZL8 1130 aaKnown RBP16.67■□□□□ 0.26
ZNF544-213ENST00000599227 BAZ1AQ9NRL2 1556 aaPredicted RBP16.63■□□□□ 0.25
ZNF544-213ENST00000599227 MIER1Q8N108 512 aa16.62■□□□□ 0.25
ZNF544-213ENST00000599227 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
ZNF544-213ENST00000599227 FAM50AQ14320 339 aaKnown RBP16.51■□□□□ 0.23
ZNF544-213ENST00000599227 WRNQ14191 1432 aaPredicted RBP eCLIP16.5■□□□□ 0.239e-6■■■■■ 50.1
ZNF544-213ENST00000599227 TOP2AP11388 1531 aaKnown RBP16.47■□□□□ 0.23
ZNF544-213ENST00000599227 CLIP1P30622 1438 aa16.47■□□□□ 0.23
ZNF544-213ENST00000599227 HIRIP3Q9BW71 556 aaPredicted RBP16.45■□□□□ 0.22
ZNF544-213ENST00000599227 SMARCA2P51531 1590 aa16.45■□□□□ 0.22
ZNF544-213ENST00000599227 GOLGA3Q08378 1498 aa16.44■□□□□ 0.22
ZNF544-213ENST00000599227 SMARCA4P51532 1647 aa16.44■□□□□ 0.22
ZNF544-213ENST00000599227 PHF23Q9BUL5 403 aaPredicted RBP16.39■□□□□ 0.21
ZNF544-213ENST00000599227 POLR3GLQ9BT43 218 aa16.36■□□□□ 0.21
ZNF544-213ENST00000599227 KANK4Q5T7N3 995 aaPredicted RBP16.35■□□□□ 0.21
ZNF544-213ENST00000599227 RAPGEF2Q9Y4G8 1499 aa16.32■□□□□ 0.2
ZNF544-213ENST00000599227 EEA1Q15075 1411 aa16.32■□□□□ 0.2
ZNF544-213ENST00000599227 BCANQ96GW7 911 aa16.31■□□□□ 0.2
ZNF544-213ENST00000599227 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
ZNF544-213ENST00000599227 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
ZNF544-213ENST00000599227 FBLN2P98095 1184 aa16.28■□□□□ 0.2
ZNF544-213ENST00000599227 SENP3-EIF4A1A0A087X0R7 540 aa16.26■□□□□ 0.19
ZNF544-213ENST00000599227 BAZ1BQ9UIG0 1483 aaKnown RBP16.24■□□□□ 0.19
ZNF544-213ENST00000599227 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
ZNF544-213ENST00000599227 SYNJ1O43426 1573 aa16.22■□□□□ 0.19
ZNF544-213ENST00000599227 CHIC2Q9UKJ5 165 aa16.17■□□□□ 0.18
ZNF544-213ENST00000599227 KCNH8Q96L42 1107 aa16.17■□□□□ 0.18
ZNF544-213ENST00000599227 UNC13AQ9UPW8 1703 aa16.14■□□□□ 0.17
ZNF544-213ENST00000599227 ATAD2BQ9ULI0 1458 aa16.14■□□□□ 0.17
ZNF544-213ENST00000599227 TRIM52Q96A61 297 aa16.14■□□□□ 0.17
ZNF544-213ENST00000599227 DDX10Q13206 875 aaKnown RBP16.13■□□□□ 0.17
ZNF544-213ENST00000599227 ZNF326Q5BKZ1 582 aaKnown RBP16.12■□□□□ 0.17
ZNF544-213ENST00000599227 SIN3AQ96ST3 1273 aa16.12■□□□□ 0.17
ZNF544-213ENST00000599227 DHX57Q6P158 1386 aaKnown RBP16.08■□□□□ 0.16
ZNF544-213ENST00000599227 KIF21BO75037 1637 aa16.06■□□□□ 0.16
ZNF544-213ENST00000599227 BICRAQ9NZM4 1560 aa16.06■□□□□ 0.16
ZNF544-213ENST00000599227 MYT1Q01538 1121 aa16.03■□□□□ 0.16
ZNF544-213ENST00000599227 ZNF777Q9ULD5 760 aaPredicted RBP16.03■□□□□ 0.16
ZNF544-213ENST00000599227 SUPT16HQ9Y5B9 1047 aaKnown RBP16.02■□□□□ 0.16
ZNF544-213ENST00000599227 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
ZNF544-213ENST00000599227 ARAP1Q96P48 1450 aa15.98■□□□□ 0.15
ZNF544-213ENST00000599227 CCNB3Q8WWL7 1395 aa15.97■□□□□ 0.15
ZNF544-213ENST00000599227 KIF27Q86VH2 1401 aa15.96■□□□□ 0.15
ZNF544-213ENST00000599227 RRP7BPQ9NSQ0 103 aa15.96■□□□□ 0.15
ZNF544-213ENST00000599227 FKBP8Q14318 412 aa15.96■□□□□ 0.14
ZNF544-213ENST00000599227 SENP3Q9H4L4 574 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms