RNA–Protein interactions for RNA: ENST00000595897.5

ARHGEF1-213, Transcript of Rho guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best)

Gene ARHGEF1, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF1-213ENST00000595897 NISCHQ9Y2I1 1504 aa34.47■■■■□ 3.11
ARHGEF1-213ENST00000595897 SHROOM4Q9ULL8 1493 aa30.05■■■□□ 2.4
ARHGEF1-213ENST00000595897 SUPT5HO00267 1087 aaKnown RBP29.73■■■□□ 2.35
ARHGEF1-213ENST00000595897 ZCCHC6Q5VYS8 1495 aaKnown RBP29.21■■■□□ 2.27
ARHGEF1-213ENST00000595897 CHIC1Q5VXU3 224 aa28.98■■■□□ 2.23
ARHGEF1-213ENST00000595897 CCDC180Q9P1Z9 1646 aa28.91■■■□□ 2.22
ARHGEF1-213ENST00000595897 DCAF8L2P0C7V8 631 aa28.91■■■□□ 2.22
ARHGEF1-213ENST00000595897 HRCP23327 699 aa28.9■■■□□ 2.22
ARHGEF1-213ENST00000595897 MYO15BQ96JP2 1530 aa28.89■■■□□ 2.21
ARHGEF1-213ENST00000595897 PCGF6Q9BYE7 350 aa28.69■■■□□ 2.18
ARHGEF1-213ENST00000595897 PPARGC1BQ86YN6 1023 aaKnown RBP28.3■■■□□ 2.12
ARHGEF1-213ENST00000595897 LOC105371045A0A1W2PR82 267 aa28.24■■■□□ 2.11
ARHGEF1-213ENST00000595897 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
ARHGEF1-213ENST00000595897 TRIM26Q12899 539 aaPredicted RBP27.94■■■□□ 2.06
ARHGEF1-213ENST00000595897 ABCC9O60706 1549 aa27.63■■■□□ 2.01
ARHGEF1-213ENST00000595897 TRIM41Q8WV44 630 aa27.61■■■□□ 2.01
ARHGEF1-213ENST00000595897 ZEB1P37275 1124 aaPredicted RBP27.54■■■□□ 2
ARHGEF1-213ENST00000595897 RSF1Q96T23 1441 aaPredicted RBP27.53■■■□□ 2
ARHGEF1-213ENST00000595897 FAM9AQ8IZU1 332 aaPredicted RBP27.5■■□□□ 1.99
ARHGEF1-213ENST00000595897 SCRIBQ14160 1630 aa27.42■■□□□ 1.98
ARHGEF1-213ENST00000595897 EHMT2Q96KQ7 1210 aa27.35■■□□□ 1.97
ARHGEF1-213ENST00000595897 RB1CC1Q8TDY2 1594 aa27.27■■□□□ 1.96
ARHGEF1-213ENST00000595897 CECR2Q9BXF3 1484 aa26.95■■□□□ 1.9
ARHGEF1-213ENST00000595897 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
ARHGEF1-213ENST00000595897 SCAF1Q9H7N4 1312 aaKnown RBP26.93■■□□□ 1.9
ARHGEF1-213ENST00000595897 MROH2BQ7Z745 1585 aa26.86■■□□□ 1.89
ARHGEF1-213ENST00000595897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.82■■□□□ 1.88
ARHGEF1-213ENST00000595897 CCER1Q8TC90 406 aaPredicted RBP26.81■■□□□ 1.88
ARHGEF1-213ENST00000595897 NACADO15069 1562 aa26.74■■□□□ 1.87
ARHGEF1-213ENST00000595897 WIZO95785 1651 aa26.71■■□□□ 1.87
ARHGEF1-213ENST00000595897 TTBK1Q5TCY1 1321 aaPredicted RBP26.58■■□□□ 1.85
ARHGEF1-213ENST00000595897 ACIN1Q9UKV3 1341 aaKnown RBP26.53■■□□□ 1.84
ARHGEF1-213ENST00000595897 BAZ1AQ9NRL2 1556 aaPredicted RBP26.52■■□□□ 1.84
ARHGEF1-213ENST00000595897 DIEXFQ68CQ4 756 aaKnown RBP26.49■■□□□ 1.83
ARHGEF1-213ENST00000595897 NEUROD1Q13562 356 aa26.47■■□□□ 1.83
ARHGEF1-213ENST00000595897 EIF4G1Q04637 1599 aaKnown RBP26.4■■□□□ 1.82
ARHGEF1-213ENST00000595897 CENPBP07199 599 aaPredicted RBP26.4■■□□□ 1.82
ARHGEF1-213ENST00000595897 CCDC88BA6NC98 1476 aa26.37■■□□□ 1.81
ARHGEF1-213ENST00000595897 ABCC8Q09428 1581 aa26.36■■□□□ 1.81
ARHGEF1-213ENST00000595897 CEP162Q5TB80 1403 aa26.36■■□□□ 1.81
ARHGEF1-213ENST00000595897 WRNQ14191 1432 aaPredicted RBP eCLIP26.35■■□□□ 1.81
ARHGEF1-213ENST00000595897 GTF3C3Q9Y5Q9 886 aa26.3■■□□□ 1.8
ARHGEF1-213ENST00000595897 UBTFP17480 764 aaKnown RBP26.29■■□□□ 1.8
ARHGEF1-213ENST00000595897 TOP2AP11388 1531 aaKnown RBP26.26■■□□□ 1.8
ARHGEF1-213ENST00000595897 SOGA1O94964 1423 aa26.26■■□□□ 1.79
ARHGEF1-213ENST00000595897 TNIKQ9UKE5 1360 aa26.25■■□□□ 1.79
ARHGEF1-213ENST00000595897 CSRNP3Q8WYN3 585 aa26.22■■□□□ 1.79
ARHGEF1-213ENST00000595897 SMARCA2P51531 1590 aa26.14■■□□□ 1.77
ARHGEF1-213ENST00000595897 ZNF316A6NFI3 1004 aaPredicted RBP26.13■■□□□ 1.77
ARHGEF1-213ENST00000595897 SMARCA4P51532 1647 aa26.12■■□□□ 1.77
ARHGEF1-213ENST00000595897 EEA1Q15075 1411 aa26.12■■□□□ 1.77
ARHGEF1-213ENST00000595897 RUSC2Q8N2Y8 1516 aa26.07■■□□□ 1.76
ARHGEF1-213ENST00000595897 GOLGA3Q08378 1498 aa26.01■■□□□ 1.75
ARHGEF1-213ENST00000595897 YTHDC1Q96MU7 727 aaKnown RBP26.01■■□□□ 1.75
ARHGEF1-213ENST00000595897 HNRNPUL2Q1KMD3 747 aaKnown RBP25.98■■□□□ 1.75
ARHGEF1-213ENST00000595897 APLP2Q06481 763 aa25.83■■□□□ 1.73
ARHGEF1-213ENST00000595897 MIER1Q8N108 512 aa25.83■■□□□ 1.73
ARHGEF1-213ENST00000595897 CEP164Q9UPV0 1460 aa25.81■■□□□ 1.72
ARHGEF1-213ENST00000595897 CLIP1P30622 1438 aa25.8■■□□□ 1.72
ARHGEF1-213ENST00000595897 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.729e-7■■■□□ 16.6
ARHGEF1-213ENST00000595897 RANGAP1P46060 587 aaPredicted RBP25.75■■□□□ 1.71
ARHGEF1-213ENST00000595897 UNC13AQ9UPW8 1703 aa25.72■■□□□ 1.71
ARHGEF1-213ENST00000595897 MYT1Q01538 1121 aa25.71■■□□□ 1.71
ARHGEF1-213ENST00000595897 VPS8Q8N3P4 1428 aa25.69■■□□□ 1.7
ARHGEF1-213ENST00000595897 KIF21BO75037 1637 aa25.65■■□□□ 1.7
ARHGEF1-213ENST00000595897 SYNJ1O43426 1573 aa25.65■■□□□ 1.7
ARHGEF1-213ENST00000595897 RAPGEF2Q9Y4G8 1499 aa25.57■■□□□ 1.68
ARHGEF1-213ENST00000595897 BAZ1BQ9UIG0 1483 aaKnown RBP25.55■■□□□ 1.68
ARHGEF1-213ENST00000595897 PEG3Q9GZU2 1588 aa25.51■■□□□ 1.67
ARHGEF1-213ENST00000595897 BICRAQ9NZM4 1560 aa25.46■■□□□ 1.67
ARHGEF1-213ENST00000595897 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
ARHGEF1-213ENST00000595897 CLSPNQ9HAW4 1339 aa25.41■■□□□ 1.66
ARHGEF1-213ENST00000595897 DHX57Q6P158 1386 aaKnown RBP25.36■■□□□ 1.65
ARHGEF1-213ENST00000595897 KANK4Q5T7N3 995 aaPredicted RBP25.3■■□□□ 1.64
ARHGEF1-213ENST00000595897 TOP2BQ02880 1626 aa25.25■■□□□ 1.63
ARHGEF1-213ENST00000595897 ARAP1Q96P48 1450 aa25.21■■□□□ 1.63
ARHGEF1-213ENST00000595897 PRXQ9BXM0 1461 aa25.2■■□□□ 1.62
ARHGEF1-213ENST00000595897 ERICH3Q5RHP9 1530 aa25.18■■□□□ 1.62
ARHGEF1-213ENST00000595897 SUPT16HQ9Y5B9 1047 aaKnown RBP25.18■■□□□ 1.62
ARHGEF1-213ENST00000595897 ITGAEP38570 1179 aa25.17■■□□□ 1.62
ARHGEF1-213ENST00000595897 RRBP1Q9P2E9 1410 aaKnown RBP25.12■■□□□ 1.61
ARHGEF1-213ENST00000595897 CCNB3Q8WWL7 1395 aa25.09■■□□□ 1.61
ARHGEF1-213ENST00000595897 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
ARHGEF1-213ENST00000595897 KIF27Q86VH2 1401 aa25.06■■□□□ 1.6
ARHGEF1-213ENST00000595897 CUX2O14529 1486 aa24.97■■□□□ 1.59
ARHGEF1-213ENST00000595897 CUX1P39880 1505 aa24.96■■□□□ 1.59
ARHGEF1-213ENST00000595897 ARHGAP35Q9NRY4 1499 aa24.95■■□□□ 1.58
ARHGEF1-213ENST00000595897 RAB3GAP2Q9H2M9 1393 aa24.93■■□□□ 1.58
ARHGEF1-213ENST00000595897 KCNH8Q96L42 1107 aa24.91■■□□□ 1.58
ARHGEF1-213ENST00000595897 TSHZ2Q9NRE2 1034 aa24.87■■□□□ 1.57
ARHGEF1-213ENST00000595897 DDX10Q13206 875 aaKnown RBP24.81■■□□□ 1.56
ARHGEF1-213ENST00000595897 FAM50AQ14320 339 aaKnown RBP24.81■■□□□ 1.56
ARHGEF1-213ENST00000595897 NCAPD3P42695 1498 aa24.8■■□□□ 1.56
ARHGEF1-213ENST00000595897 SETD5Q9C0A6 1442 aa24.79■■□□□ 1.56
ARHGEF1-213ENST00000595897 MAPKBP1O60336 1514 aa24.79■■□□□ 1.56
ARHGEF1-213ENST00000595897 BCANQ96GW7 911 aa24.78■■□□□ 1.56
ARHGEF1-213ENST00000595897 SIN3AQ96ST3 1273 aa24.77■■□□□ 1.56
ARHGEF1-213ENST00000595897 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
ARHGEF1-213ENST00000595897 CFTRP13569 1480 aa24.75■■□□□ 1.55
ARHGEF1-213ENST00000595897 ATP1B4Q9UN42 357 aaPredicted RBP24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms