RNA–Protein interactions for RNA: ENST00000590334.5

APOC1-206, Transcript of apolipoprotein C1, humanhuman

TSL 5

Gene APOC1, Length 508 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-206ENST00000590334 NISCHQ9Y2I1 1504 aa28.82■■■□□ 2.2
APOC1-206ENST00000590334 CCDC180Q9P1Z9 1646 aa25.56■■□□□ 1.68
APOC1-206ENST00000590334 ABCC9O60706 1549 aa24.48■■□□□ 1.51
APOC1-206ENST00000590334 ZCCHC6Q5VYS8 1495 aaKnown RBP24.09■■□□□ 1.45
APOC1-206ENST00000590334 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
APOC1-206ENST00000590334 MYO15BQ96JP2 1530 aa23.89■■□□□ 1.41
APOC1-206ENST00000590334 NACADO15069 1562 aa23.88■■□□□ 1.41
APOC1-206ENST00000590334 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
APOC1-206ENST00000590334 DCAF8L2P0C7V8 631 aa23.74■■□□□ 1.39
APOC1-206ENST00000590334 UNC13AQ9UPW8 1703 aa23.39■■□□□ 1.33
APOC1-206ENST00000590334 SCRIBQ14160 1630 aa23.25■■□□□ 1.31
APOC1-206ENST00000590334 BICRAQ9NZM4 1560 aa23.1■■□□□ 1.29
APOC1-206ENST00000590334 SHROOM4Q9ULL8 1493 aa22.9■■□□□ 1.26
APOC1-206ENST00000590334 PABPN1Q86U42 306 aaKnown RBP eCLIP22.88■■□□□ 1.25
APOC1-206ENST00000590334 EIF4G1Q04637 1599 aaKnown RBP22.42■■□□□ 1.18
APOC1-206ENST00000590334 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
APOC1-206ENST00000590334 BAZ1AQ9NRL2 1556 aaPredicted RBP22.32■■□□□ 1.16
APOC1-206ENST00000590334 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
APOC1-206ENST00000590334 CC2D2AQ9P2K1 1620 aa22.24■■□□□ 1.15
APOC1-206ENST00000590334 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.14
APOC1-206ENST00000590334 PEG3Q9GZU2 1588 aa22.12■■□□□ 1.13
APOC1-206ENST00000590334 DNAJC5BQ9UF47 199 aa22.11■■□□□ 1.13
APOC1-206ENST00000590334 SMARCA2P51531 1590 aa22.08■■□□□ 1.12
APOC1-206ENST00000590334 RSF1Q96T23 1441 aaPredicted RBP22.06■■□□□ 1.12
APOC1-206ENST00000590334 ATAD2BQ9ULI0 1458 aa22.04■■□□□ 1.12
APOC1-206ENST00000590334 WIZO95785 1651 aa22.02■■□□□ 1.12
APOC1-206ENST00000590334 NCAPD3P42695 1498 aa21.99■■□□□ 1.11
APOC1-206ENST00000590334 HMGXB3Q12766 1538 aa21.96■■□□□ 1.11
APOC1-206ENST00000590334 BAZ1BQ9UIG0 1483 aaKnown RBP21.88■■□□□ 1.09
APOC1-206ENST00000590334 TOP2AP11388 1531 aaKnown RBP21.79■■□□□ 1.08
APOC1-206ENST00000590334 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
APOC1-206ENST00000590334 CCDC88BA6NC98 1476 aa21.5■■□□□ 1.03
APOC1-206ENST00000590334 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
APOC1-206ENST00000590334 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
APOC1-206ENST00000590334 CADPSQ9ULU8 1353 aa21.34■■□□□ 1.01
APOC1-206ENST00000590334 CFTRP13569 1480 aa21.32■■□□□ 1
APOC1-206ENST00000590334 NESP48681 1621 aa21.32■■□□□ 1
APOC1-206ENST00000590334 KIF21AQ7Z4S6 1674 aa21.18■□□□□ 0.98
APOC1-206ENST00000590334 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
APOC1-206ENST00000590334 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
APOC1-206ENST00000590334 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
APOC1-206ENST00000590334 CEP164Q9UPV0 1460 aa21.05■□□□□ 0.96
APOC1-206ENST00000590334 THOC2Q8NI27 1593 aaKnown RBP21.01■□□□□ 0.95
APOC1-206ENST00000590334 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
APOC1-206ENST00000590334 WDR62O43379 1518 aa20.9■□□□□ 0.94
APOC1-206ENST00000590334 URB2Q14146 1524 aaKnown RBP20.88■□□□□ 0.93
APOC1-206ENST00000590334 ABCC8Q09428 1581 aa20.86■□□□□ 0.93
APOC1-206ENST00000590334 DNMBPQ6XZF7 1577 aa20.86■□□□□ 0.93
APOC1-206ENST00000590334 CUX1P39880 1505 aa20.82■□□□□ 0.92
APOC1-206ENST00000590334 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
APOC1-206ENST00000590334 BIVM-ERCC5R4GMW8 1640 aa20.8■□□□□ 0.92
APOC1-206ENST00000590334 CUX2O14529 1486 aa20.78■□□□□ 0.92
APOC1-206ENST00000590334 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
APOC1-206ENST00000590334 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
APOC1-206ENST00000590334 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
APOC1-206ENST00000590334 POLA1P09884 1462 aaPredicted RBP20.66■□□□□ 0.9
APOC1-206ENST00000590334 FGD5Q6ZNL6 1462 aa20.66■□□□□ 0.9
APOC1-206ENST00000590334 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.89
APOC1-206ENST00000590334 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
APOC1-206ENST00000590334 IFT140Q96RY7 1462 aa20.59■□□□□ 0.89
APOC1-206ENST00000590334 SOGA1O94964 1423 aa20.55■□□□□ 0.88
APOC1-206ENST00000590334 RAD54L2Q9Y4B4 1467 aa20.54■□□□□ 0.88
APOC1-206ENST00000590334 ABCA10Q8WWZ4 1543 aa20.51■□□□□ 0.87
APOC1-206ENST00000590334 CHIC1Q5VXU3 224 aa20.48■□□□□ 0.87
APOC1-206ENST00000590334 TRIM41Q8WV44 630 aa20.47■□□□□ 0.87
APOC1-206ENST00000590334 EIF4G3O43432 1585 aaKnown RBP20.46■□□□□ 0.87
APOC1-206ENST00000590334 ZNF608Q9ULD9 1512 aaPredicted RBP20.45■□□□□ 0.86
APOC1-206ENST00000590334 ABCA5Q8WWZ7 1642 aa20.44■□□□□ 0.86
APOC1-206ENST00000590334 PBRM1Q86U86 1689 aa20.38■□□□□ 0.85
APOC1-206ENST00000590334 TDRD9Q8NDG6 1382 aaKnown RBP20.36■□□□□ 0.85
APOC1-206ENST00000590334 AQRO60306 1485 aaKnown RBP eCLIP20.36■□□□□ 0.851e-7■■■■□ 25.3
APOC1-206ENST00000590334 GAPVD1Q14C86 1478 aa20.35■□□□□ 0.85
APOC1-206ENST00000590334 KIF27Q86VH2 1401 aa20.31■□□□□ 0.84
APOC1-206ENST00000590334 GRIN2BQ13224 1484 aa20.3■□□□□ 0.84
APOC1-206ENST00000590334 ERICH3Q5RHP9 1530 aa20.29■□□□□ 0.84
APOC1-206ENST00000590334 RUSC2Q8N2Y8 1516 aa20.24■□□□□ 0.83
APOC1-206ENST00000590334 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
APOC1-206ENST00000590334 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
APOC1-206ENST00000590334 CUL7Q14999 1698 aa20.21■□□□□ 0.83
APOC1-206ENST00000590334 EEA1Q15075 1411 aa20.2■□□□□ 0.82
APOC1-206ENST00000590334 ADAMTS12P58397 1594 aa20.19■□□□□ 0.82
APOC1-206ENST00000590334 IGF1RP08069 1367 aa20.18■□□□□ 0.82
APOC1-206ENST00000590334 CHD1O14646 1710 aa20.16■□□□□ 0.82
APOC1-206ENST00000590334 SYNJ2O15056 1496 aa20.13■□□□□ 0.81
APOC1-206ENST00000590334 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
APOC1-206ENST00000590334 CARMIL1Q5VZK9 1371 aa20.06■□□□□ 0.8
APOC1-206ENST00000590334 CSRNP3Q8WYN3 585 aa20.05■□□□□ 0.8
APOC1-206ENST00000590334 GRIN2AQ12879 1464 aa20.05■□□□□ 0.8
APOC1-206ENST00000590334 PRXQ9BXM0 1461 aa20.05■□□□□ 0.8
APOC1-206ENST00000590334 KIF21BO75037 1637 aa20.02■□□□□ 0.79
APOC1-206ENST00000590334 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
APOC1-206ENST00000590334 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
APOC1-206ENST00000590334 FAM9AQ8IZU1 332 aaPredicted RBP19.98■□□□□ 0.79
APOC1-206ENST00000590334 FBLN2P98095 1184 aa19.96■□□□□ 0.79
APOC1-206ENST00000590334 CEP170Q5SW79 1584 aa19.95■□□□□ 0.78
APOC1-206ENST00000590334 NUP160Q12769 1436 aa19.94■□□□□ 0.78
APOC1-206ENST00000590334 CTTNBP2Q8WZ74 1663 aa19.92■□□□□ 0.78
APOC1-206ENST00000590334 CLASP1Q7Z460 1538 aa19.92■□□□□ 0.78
APOC1-206ENST00000590334 OSCARQ8IYS5 282 aa19.9■□□□□ 0.78
APOC1-206ENST00000590334 GOLGA3Q08378 1498 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms