RNA–Protein interactions for RNA: ENST00000590334.5

APOC1-206, Transcript of apolipoprotein C1, humanhuman

TSL 5

Gene APOC1, Length 508 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-206ENST00000590334 DDX3XO00571 662 aaKnown RBP eCLIP12.71□□□□□ -0.371e-7■■■■■ 93.7
APOC1-206ENST00000590334 PCBP1Q15365 356 aaKnown RBP eCLIP13.31□□□□□ -0.285e-16■■■■■ 49.4
APOC1-206ENST00000590334 PABPC4Q13310 644 aaKnown RBP eCLIP14.09□□□□□ -0.152e-8■■■■■ 46.6
APOC1-206ENST00000590334 LARP4Q71RC2 724 aaKnown RBP eCLIP11.41□□□□□ -0.583e-11■■■■■ 28.6
APOC1-206ENST00000590334 PRPF4O43172 522 aaKnown RBP eCLIP11.66□□□□□ -0.541e-8■■■■■ 28.4
APOC1-206ENST00000590334 AQRO60306 1485 aaKnown RBP eCLIP20.36■□□□□ 0.851e-7■■■■□ 25.3
APOC1-206ENST00000590334 SND1Q7KZF4 910 aaKnown RBP eCLIP12.53□□□□□ -0.45e-25■■■■□ 21
APOC1-206ENST00000590334 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.55□□□□□ -0.43e-11■■■□□ 18.3
APOC1-206ENST00000590334 RPS3P23396 243 aaKnown RBP eCLIP11.9□□□□□ -0.51e-14■■■□□ 18
APOC1-206ENST00000590334 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.32□□□□□ -0.124e-15■■■□□ 17.6
APOC1-206ENST00000590334 PCBP2Q15366 365 aaKnown RBP eCLIP11.64□□□□□ -0.553e-48■■■□□ 16.7
APOC1-206ENST00000590334 EFTUD2Q15029 972 aaKnown RBP eCLIP11.86□□□□□ -0.515e-13■■□□□ 14.1
APOC1-206ENST00000590334 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.17□□□□□ -0.32e-6■■□□□ 11.9
APOC1-206ENST00000590334 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.9□□□□□ -0.349e-7■■□□□ 11.5
APOC1-206ENST00000590334 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.87□□□□□ -0.672e-10■■□□□ 11.4
APOC1-206ENST00000590334 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.53□□□□□ -0.44e-6■□□□□ 11
APOC1-206ENST00000590334 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.97■□□□□ 0.471e-9■□□□□ 10.7
APOC1-206ENST00000590334 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.65□□□□□ -0.226e-8■□□□□ 9.9
APOC1-206ENST00000590334 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.2□□□□□ -0.39e-7■□□□□ 9.7
APOC1-206ENST00000590334 EIF3DO15371 548 aaKnown RBP eCLIP13.28□□□□□ -0.288e-8■□□□□ 9.1
APOC1-206ENST00000590334 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.85□□□□□ -0.355e-9■□□□□ 8.6
APOC1-206ENST00000590334 AKAP1Q92667 903 aaKnown RBP eCLIP10.37□□□□□ -0.751e-13■□□□□ 8.2
Retrieved 22 of 22 RNA–protein pairs in 6.3 ms