RNA–Protein interactions for RNA: ENST00000589493.1

BECN1-210, Transcript of beclin 1, humanhuman

TSL 2

Gene BECN1, Length 719 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BECN1-210ENST00000589493 AEBP2Q6ZN18 517 aaPredicted RBP24.38■■□□□ 1.49
BECN1-210ENST00000589493 CHIC1Q5VXU3 224 aa23.34■■□□□ 1.33
BECN1-210ENST00000589493 SENP3Q9H4L4 574 aaPredicted RBP20.71■□□□□ 0.91
BECN1-210ENST00000589493 PHF23Q9BUL5 403 aaPredicted RBP20.5■□□□□ 0.87
BECN1-210ENST00000589493 NISCHQ9Y2I1 1504 aa19.44■□□□□ 0.7
BECN1-210ENST00000589493 FOXD1Q16676 465 aa19.31■□□□□ 0.68
BECN1-210ENST00000589493 PLPPR3Q6T4P5 718 aa18.72■□□□□ 0.59
BECN1-210ENST00000589493 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
BECN1-210ENST00000589493 ADRA2BP18089 450 aa18.2■□□□□ 0.5
BECN1-210ENST00000589493 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
BECN1-210ENST00000589493 MSH5O43196 834 aa17.94■□□□□ 0.46
BECN1-210ENST00000589493 POTEDQ86YR6 584 aa17.17■□□□□ 0.34
BECN1-210ENST00000589493 CCDC180Q9P1Z9 1646 aa16.97■□□□□ 0.31
BECN1-210ENST00000589493 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
BECN1-210ENST00000589493 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
BECN1-210ENST00000589493 DMRT2Q9Y5R5 561 aa16.47■□□□□ 0.23
BECN1-210ENST00000589493 PPP4R3CPQ6ZMV5 832 aa16.46■□□□□ 0.23
BECN1-210ENST00000589493 ABCC9O60706 1549 aa16.28■□□□□ 0.2
BECN1-210ENST00000589493 ZCCHC6Q5VYS8 1495 aaKnown RBP16.28■□□□□ 0.2
BECN1-210ENST00000589493 DCAF1Q9Y4B6 1507 aa16.14■□□□□ 0.18
BECN1-210ENST00000589493 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
BECN1-210ENST00000589493 MYO15BQ96JP2 1530 aa16.04■□□□□ 0.16
BECN1-210ENST00000589493 DCAF8L2P0C7V8 631 aa16.01■□□□□ 0.15
BECN1-210ENST00000589493 HOXD11P31277 338 aaPredicted RBP15.95■□□□□ 0.14
BECN1-210ENST00000589493 NACADO15069 1562 aa15.89■□□□□ 0.13
BECN1-210ENST00000589493 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
BECN1-210ENST00000589493 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
BECN1-210ENST00000589493 NCBP3Q53F19 620 aaKnown RBP15.85■□□□□ 0.13
BECN1-210ENST00000589493 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.12
BECN1-210ENST00000589493 NPM3O75607 178 aaKnown RBP15.67■□□□□ 0.1
BECN1-210ENST00000589493 SHROOM4Q9ULL8 1493 aa15.59■□□□□ 0.09
BECN1-210ENST00000589493 KCNA4P22459 653 aa15.59■□□□□ 0.09
BECN1-210ENST00000589493 SCRIBQ14160 1630 aa15.46■□□□□ 0.07
BECN1-210ENST00000589493 UNC13AQ9UPW8 1703 aa15.46■□□□□ 0.07
BECN1-210ENST00000589493 RNF39Q9H2S5 420 aa15.36■□□□□ 0.05
BECN1-210ENST00000589493 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
BECN1-210ENST00000589493 BICRAQ9NZM4 1560 aa15.29■□□□□ 0.04
BECN1-210ENST00000589493 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
BECN1-210ENST00000589493 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
BECN1-210ENST00000589493 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.19■□□□□ 0.024e-7■□□□□ 10.4
BECN1-210ENST00000589493 C1QBPQ07021 282 aaKnown RBP15.13■□□□□ 0.01
BECN1-210ENST00000589493 CECR2Q9BXF3 1484 aa15.1■□□□□ 0.01
BECN1-210ENST00000589493 RSF1Q96T23 1441 aaPredicted RBP15.04■□□□□ -0
BECN1-210ENST00000589493 BAZ1AQ9NRL2 1556 aaPredicted RBP14.98□□□□□ -0.01
BECN1-210ENST00000589493 SUPT5HO00267 1087 aaKnown RBP14.98□□□□□ -0.01
BECN1-210ENST00000589493 MROH2BQ7Z745 1585 aa14.98□□□□□ -0.01
BECN1-210ENST00000589493 SLC4A2P04920 1241 aa14.93□□□□□ -0.02
BECN1-210ENST00000589493 U3KPZ7 1027 aaPredicted RBP14.92□□□□□ -0.02
BECN1-210ENST00000589493 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
BECN1-210ENST00000589493 SMARCA4P51532 1647 aa14.89□□□□□ -0.03
BECN1-210ENST00000589493 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
BECN1-210ENST00000589493 CC2D2AQ9P2K1 1620 aa14.8□□□□□ -0.04
BECN1-210ENST00000589493 ATAD2BQ9ULI0 1458 aa14.79□□□□□ -0.04
BECN1-210ENST00000589493 WIZO95785 1651 aa14.75□□□□□ -0.05
BECN1-210ENST00000589493 NCAPD3P42695 1498 aa14.75□□□□□ -0.05
BECN1-210ENST00000589493 SLC4A1APQ9BWU0 796 aaKnown RBP14.73□□□□□ -0.05
BECN1-210ENST00000589493 SMARCA2P51531 1590 aa14.73□□□□□ -0.05
BECN1-210ENST00000589493 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
BECN1-210ENST00000589493 SPINK5Q9NQ38 1064 aaPredicted RBP14.65□□□□□ -0.06
BECN1-210ENST00000589493 HMGXB3Q12766 1538 aa14.62□□□□□ -0.07
BECN1-210ENST00000589493 BAZ1BQ9UIG0 1483 aaKnown RBP14.62□□□□□ -0.07
BECN1-210ENST00000589493 CAPN15O75808 1086 aa14.58□□□□□ -0.08
BECN1-210ENST00000589493 CCDC88BA6NC98 1476 aa14.57□□□□□ -0.08
BECN1-210ENST00000589493 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
BECN1-210ENST00000589493 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
BECN1-210ENST00000589493 MYCNP04198 464 aaPredicted RBP14.46□□□□□ -0.09
BECN1-210ENST00000589493 DSG3P32926 999 aa14.46□□□□□ -0.09
BECN1-210ENST00000589493 SAMD1Q6SPF0 538 aaPredicted RBP14.46□□□□□ -0.09
BECN1-210ENST00000589493 APLP2Q06481 763 aa14.45□□□□□ -0.1
BECN1-210ENST00000589493 FOXD4L1Q9NU39 408 aa14.44□□□□□ -0.1
BECN1-210ENST00000589493 TRHP20396 242 aaPredicted RBP14.4□□□□□ -0.1
BECN1-210ENST00000589493 ZNF219Q9P2Y4 722 aaPredicted RBP14.36□□□□□ -0.11
BECN1-210ENST00000589493 ZBTB22O15209 634 aa14.35□□□□□ -0.11
BECN1-210ENST00000589493 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
BECN1-210ENST00000589493 CFTRP13569 1480 aa14.34□□□□□ -0.11
BECN1-210ENST00000589493 ABCB7O75027 752 aa14.27□□□□□ -0.13
BECN1-210ENST00000589493 LAMC3Q9Y6N6 1575 aa14.25□□□□□ -0.13
BECN1-210ENST00000589493 ATF5Q9Y2D1 282 aaPredicted RBP14.16□□□□□ -0.14
BECN1-210ENST00000589493 PRDM2Q13029 1718 aa14.15□□□□□ -0.14
BECN1-210ENST00000589493 TRIM41Q8WV44 630 aa14.15□□□□□ -0.14
BECN1-210ENST00000589493 NESP48681 1621 aa14.15□□□□□ -0.14
BECN1-210ENST00000589493 PDS5BQ9NTI5 1447 aa14.13□□□□□ -0.15
BECN1-210ENST00000589493 WRNQ14191 1432 aaPredicted RBP eCLIP14.12□□□□□ -0.15
BECN1-210ENST00000589493 ERCC6Q03468 1493 aa14.12□□□□□ -0.15
BECN1-210ENST00000589493 FANCD2Q9BXW9 1451 aa14.1□□□□□ -0.15
BECN1-210ENST00000589493 POLA2Q14181 598 aa14.08□□□□□ -0.16
BECN1-210ENST00000589493 ABCC8Q09428 1581 aa14.07□□□□□ -0.16
BECN1-210ENST00000589493 KIF21AQ7Z4S6 1674 aa14.04□□□□□ -0.16
BECN1-210ENST00000589493 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
BECN1-210ENST00000589493 CUX1P39880 1505 aa14□□□□□ -0.17
BECN1-210ENST00000589493 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
BECN1-210ENST00000589493 TOP2BQ02880 1626 aa13.98□□□□□ -0.17
BECN1-210ENST00000589493 CUX2O14529 1486 aa13.97□□□□□ -0.17
BECN1-210ENST00000589493 ATXN8OSP0DMR3 200 aa13.96□□□□□ -0.17
BECN1-210ENST00000589493 THOC2Q8NI27 1593 aaKnown RBP13.96□□□□□ -0.18
BECN1-210ENST00000589493 MRC2Q9UBG0 1479 aa13.94□□□□□ -0.18
BECN1-210ENST00000589493 URB2Q14146 1524 aaKnown RBP13.94□□□□□ -0.18
BECN1-210ENST00000589493 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
BECN1-210ENST00000589493 TOPBP1Q92547 1522 aa13.93□□□□□ -0.18
BECN1-210ENST00000589493 DNMBPQ6XZF7 1577 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms