RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 AEBP2Q6ZN18 517 aaPredicted RBP25.63■■□□□ 1.69
SMAD4-204ENST00000586253 CHIC1Q5VXU3 224 aa24.16■■□□□ 1.46
SMAD4-204ENST00000586253 SENP3Q9H4L4 574 aaPredicted RBP21.71■■□□□ 1.07
SMAD4-204ENST00000586253 PHF23Q9BUL5 403 aaPredicted RBP21.47■■□□□ 1.03
SMAD4-204ENST00000586253 FOXD1Q16676 465 aa20.35■□□□□ 0.85
SMAD4-204ENST00000586253 NISCHQ9Y2I1 1504 aa19.3■□□□□ 0.68
SMAD4-204ENST00000586253 PLPPR3Q6T4P5 718 aa19.17■□□□□ 0.66
SMAD4-204ENST00000586253 PPP6R1Q9UPN7 881 aa19.01■□□□□ 0.63
SMAD4-204ENST00000586253 MSH5O43196 834 aa18.96■□□□□ 0.63
SMAD4-204ENST00000586253 PIAS4Q8N2W9 510 aaPredicted RBP18.87■□□□□ 0.61
SMAD4-204ENST00000586253 ADRA2BP18089 450 aa18.86■□□□□ 0.61
SMAD4-204ENST00000586253 POTEDQ86YR6 584 aa18.76■□□□□ 0.59
SMAD4-204ENST00000586253 MAPK8IP2Q13387 824 aaPredicted RBP17.39■□□□□ 0.37
SMAD4-204ENST00000586253 DMRT2Q9Y5R5 561 aa17.26■□□□□ 0.35
SMAD4-204ENST00000586253 CCDC180Q9P1Z9 1646 aa17.15■□□□□ 0.34
SMAD4-204ENST00000586253 SCAF1Q9H7N4 1312 aaKnown RBP17.1■□□□□ 0.33
SMAD4-204ENST00000586253 PPP4R3CPQ6ZMV5 832 aa16.84■□□□□ 0.29
SMAD4-204ENST00000586253 HOXD11P31277 338 aaPredicted RBP16.63■□□□□ 0.25
SMAD4-204ENST00000586253 ABCC9O60706 1549 aa16.59■□□□□ 0.25
SMAD4-204ENST00000586253 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
SMAD4-204ENST00000586253 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
SMAD4-204ENST00000586253 DCAF8L1A6NGE4 600 aa16.36■□□□□ 0.21
SMAD4-204ENST00000586253 CACNB1Q02641 598 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-204ENST00000586253 RNF39Q9H2S5 420 aa16.26■□□□□ 0.19
SMAD4-204ENST00000586253 ZCCHC6Q5VYS8 1495 aaKnown RBP16.11■□□□□ 0.17
SMAD4-204ENST00000586253 NACADO15069 1562 aa16.09■□□□□ 0.17
SMAD4-204ENST00000586253 DNAJC5BQ9UF47 199 aa16.07■□□□□ 0.16
SMAD4-204ENST00000586253 RB1CC1Q8TDY2 1594 aa16.06■□□□□ 0.16
SMAD4-204ENST00000586253 MYO15BQ96JP2 1530 aa16.06■□□□□ 0.16
SMAD4-204ENST00000586253 NCBP3Q53F19 620 aaKnown RBP16.04■□□□□ 0.16
SMAD4-204ENST00000586253 DCAF1Q9Y4B6 1507 aa16.03■□□□□ 0.16
SMAD4-204ENST00000586253 DCAF8L2P0C7V8 631 aa15.98■□□□□ 0.15
SMAD4-204ENST00000586253 NPM3O75607 178 aaKnown RBP15.96■□□□□ 0.15
SMAD4-204ENST00000586253 C1QBPQ07021 282 aaKnown RBP15.95■□□□□ 0.14
SMAD4-204ENST00000586253 UNC13AQ9UPW8 1703 aa15.68■□□□□ 0.1
SMAD4-204ENST00000586253 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.1
SMAD4-204ENST00000586253 SCRIBQ14160 1630 aa15.59■□□□□ 0.09
SMAD4-204ENST00000586253 KCNA4P22459 653 aa15.57■□□□□ 0.08
SMAD4-204ENST00000586253 BICRAQ9NZM4 1560 aa15.56■□□□□ 0.08
SMAD4-204ENST00000586253 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
SMAD4-204ENST00000586253 SHROOM4Q9ULL8 1493 aa15.48■□□□□ 0.07
SMAD4-204ENST00000586253 U3KPZ7 1027 aaPredicted RBP15.48■□□□□ 0.07
SMAD4-204ENST00000586253 SLC4A2P04920 1241 aa15.34■□□□□ 0.05
SMAD4-204ENST00000586253 SPINK5Q9NQ38 1064 aaPredicted RBP15.27■□□□□ 0.04
SMAD4-204ENST00000586253 DSG3P32926 999 aa15.19■□□□□ 0.02
SMAD4-204ENST00000586253 EIF4G1Q04637 1599 aaKnown RBP15.15■□□□□ 0.02
SMAD4-204ENST00000586253 CAPN15O75808 1086 aa15.11■□□□□ 0.01
SMAD4-204ENST00000586253 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
SMAD4-204ENST00000586253 CECR2Q9BXF3 1484 aa14.98□□□□□ -0.01
SMAD4-204ENST00000586253 BAZ1AQ9NRL2 1556 aaPredicted RBP14.97□□□□□ -0.01
SMAD4-204ENST00000586253 SMARCA4P51532 1647 aa14.95□□□□□ -0.02
SMAD4-204ENST00000586253 TRHP20396 242 aaPredicted RBP14.86□□□□□ -0.03
SMAD4-204ENST00000586253 SMARCA2P51531 1590 aa14.85□□□□□ -0.03
SMAD4-204ENST00000586253 MROH2BQ7Z745 1585 aa14.85□□□□□ -0.03
SMAD4-204ENST00000586253 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
SMAD4-204ENST00000586253 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
SMAD4-204ENST00000586253 NCAPD3P42695 1498 aa14.83□□□□□ -0.03
SMAD4-204ENST00000586253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.83□□□□□ -0.04
SMAD4-204ENST00000586253 HNRNPUL2Q1KMD3 747 aaKnown RBP14.83□□□□□ -0.04
SMAD4-204ENST00000586253 ZNF219Q9P2Y4 722 aaPredicted RBP14.83□□□□□ -0.04
SMAD4-204ENST00000586253 ABCB7O75027 752 aa14.81□□□□□ -0.04
SMAD4-204ENST00000586253 APLP2Q06481 763 aa14.81□□□□□ -0.04
SMAD4-204ENST00000586253 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
SMAD4-204ENST00000586253 SAMD1Q6SPF0 538 aaPredicted RBP14.78□□□□□ -0.04
SMAD4-204ENST00000586253 RSF1Q96T23 1441 aaPredicted RBP14.73□□□□□ -0.05
SMAD4-204ENST00000586253 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
SMAD4-204ENST00000586253 WIZO95785 1651 aa14.69□□□□□ -0.06
SMAD4-204ENST00000586253 MYCNP04198 464 aaPredicted RBP14.68□□□□□ -0.06
SMAD4-204ENST00000586253 POTEHQ6S545 545 aa14.63□□□□□ -0.07
SMAD4-204ENST00000586253 SLC4A1APQ9BWU0 796 aaKnown RBP14.58□□□□□ -0.08
SMAD4-204ENST00000586253 TOP2AP11388 1531 aaKnown RBP14.57□□□□□ -0.08
SMAD4-204ENST00000586253 POLA2Q14181 598 aa14.5□□□□□ -0.09
SMAD4-204ENST00000586253 FOXD4L1Q9NU39 408 aa14.49□□□□□ -0.09
SMAD4-204ENST00000586253 ATF5Q9Y2D1 282 aaPredicted RBP14.49□□□□□ -0.09
SMAD4-204ENST00000586253 LAMC3Q9Y6N6 1575 aa14.43□□□□□ -0.1
SMAD4-204ENST00000586253 ZBTB22O15209 634 aa14.4□□□□□ -0.1
SMAD4-204ENST00000586253 CADPSQ9ULU8 1353 aa14.39□□□□□ -0.11
SMAD4-204ENST00000586253 NESP48681 1621 aa14.38□□□□□ -0.11
SMAD4-204ENST00000586253 CCDC88BA6NC98 1476 aa14.38□□□□□ -0.11
SMAD4-204ENST00000586253 SUPT5HO00267 1087 aaKnown RBP14.36□□□□□ -0.11
SMAD4-204ENST00000586253 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
SMAD4-204ENST00000586253 CFTRP13569 1480 aa14.34□□□□□ -0.11
SMAD4-204ENST00000586253 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
SMAD4-204ENST00000586253 ERCC6Q03468 1493 aa14.31□□□□□ -0.12
SMAD4-204ENST00000586253 PRDM2Q13029 1718 aa14.27□□□□□ -0.13
SMAD4-204ENST00000586253 KIF21AQ7Z4S6 1674 aa14.25□□□□□ -0.13
SMAD4-204ENST00000586253 FANCD2Q9BXW9 1451 aa14.22□□□□□ -0.13
SMAD4-204ENST00000586253 CEP164Q9UPV0 1460 aa14.19□□□□□ -0.14
SMAD4-204ENST00000586253 THOC2Q8NI27 1593 aaKnown RBP14.19□□□□□ -0.14
SMAD4-204ENST00000586253 CUX2O14529 1486 aa14.17□□□□□ -0.14
SMAD4-204ENST00000586253 MRC2Q9UBG0 1479 aa14.16□□□□□ -0.14
SMAD4-204ENST00000586253 CHRDL2Q6WN34 429 aa14.15□□□□□ -0.14
SMAD4-204ENST00000586253 WDR62O43379 1518 aa14.13□□□□□ -0.15
SMAD4-204ENST00000586253 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
SMAD4-204ENST00000586253 ZBTB12Q9Y330 459 aaPredicted RBP14.11□□□□□ -0.15
SMAD4-204ENST00000586253 ATXN8OSP0DMR3 200 aa14.07□□□□□ -0.16
SMAD4-204ENST00000586253 AKT1S1Q96B36 256 aa14.07□□□□□ -0.16
SMAD4-204ENST00000586253 URB2Q14146 1524 aaKnown RBP14.06□□□□□ -0.16
SMAD4-204ENST00000586253 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
SMAD4-204ENST00000586253 OSCARQ8IYS5 282 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms