RNA–Protein interactions for RNA: ENST00000583732.1

SREBF1-222, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 4

Gene SREBF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-222	ENST00000583732	NISCH	Q9Y2I1	1504 aa		38.02	■■■■□ 3.68
SREBF1-222	ENST00000583732	ABCC9	O60706	1549 aa		34.2	■■■■□ 3.07
SREBF1-222	ENST00000583732	CCDC180	Q9P1Z9	1646 aa		34.17	■■■■□ 3.06
SREBF1-222	ENST00000583732	RB1CC1	Q8TDY2	1594 aa		32.51	■■■□□ 2.79
SREBF1-222	ENST00000583732	NACAD	O15069	1562 aa		32.25	■■■□□ 2.75
SREBF1-222	ENST00000583732	DCAF8L2	P0C7V8	631 aa		32.14	■■■□□ 2.74
SREBF1-222	ENST00000583732	DNAJC5B	Q9UF47	199 aa		32.01	■■■□□ 2.71
SREBF1-222	ENST00000583732	UNC13A	Q9UPW8	1703 aa		31.88	■■■□□ 2.69
SREBF1-222	ENST00000583732	PABPN1	Q86U42	306 aa	Known RBP eCLIP	31.81	■■■□□ 2.68
SREBF1-222	ENST00000583732	MYO15B	Q96JP2	1530 aa		31.73	■■■□□ 2.67
SREBF1-222	ENST00000583732	BICRA	Q9NZM4	1560 aa		31.58	■■■□□ 2.65
SREBF1-222	ENST00000583732	ZCCHC6	Q5VYS8	1495 aa	Known RBP	31.52	■■■□□ 2.64
SREBF1-222	ENST00000583732	DCAF1	Q9Y4B6	1507 aa		31.35	■■■□□ 2.61
SREBF1-222	ENST00000583732	SCRIB	Q14160	1630 aa		31.21	■■■□□ 2.59
SREBF1-222	ENST00000583732	SHROOM4	Q9ULL8	1493 aa		31.06	■■■□□ 2.56
SREBF1-222	ENST00000583732	CC2D2A	Q9P2K1	1620 aa		30.89	■■■□□ 2.54
SREBF1-222	ENST00000583732	EIF4G1	Q04637	1599 aa	Known RBP	30.81	■■■□□ 2.52
SREBF1-222	ENST00000583732	CECR2	Q9BXF3	1484 aa		30.77	■■■□□ 2.52
SREBF1-222	ENST00000583732	NCAPD3	P42695	1498 aa		29.73	■■■□□ 2.35
SREBF1-222	ENST00000583732	SMARCA4	P51532	1647 aa		29.71	■■■□□ 2.35
SREBF1-222	ENST00000583732	ATAD2B	Q9ULI0	1458 aa		29.68	■■■□□ 2.34
SREBF1-222	ENST00000583732	SMARCA2	P51531	1590 aa		29.61	■■■□□ 2.33
SREBF1-222	ENST00000583732	HMGXB3	Q12766	1538 aa		29.56	■■■□□ 2.32
SREBF1-222	ENST00000583732	ERCC6	Q03468	1493 aa		29.53	■■■□□ 2.32
SREBF1-222	ENST00000583732	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.52	■■■□□ 2.32
SREBF1-222	ENST00000583732	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.44	■■■□□ 2.3
SREBF1-222	ENST00000583732	CUX2	O14529	1486 aa		29.41	■■■□□ 2.3
SREBF1-222	ENST00000583732	NES	P48681	1621 aa		29.38	■■■□□ 2.29
SREBF1-222	ENST00000583732	DNAJC5	Q9H3Z4	198 aa		29.36	■■■□□ 2.29
SREBF1-222	ENST00000583732	PEG3	Q9GZU2	1588 aa		29.35	■■■□□ 2.29
SREBF1-222	ENST00000583732	MROH2B	Q7Z745	1585 aa		29.33	■■■□□ 2.29
SREBF1-222	ENST00000583732	LAMC3	Q9Y6N6	1575 aa		29.13	■■■□□ 2.25
SREBF1-222	ENST00000583732	THOC2	Q8NI27	1593 aa	Known RBP	29.09	■■■□□ 2.25
SREBF1-222	ENST00000583732	KIF21A	Q7Z4S6	1674 aa		29.06	■■■□□ 2.24
SREBF1-222	ENST00000583732	WIZ	O95785	1651 aa		29.03	■■■□□ 2.24
SREBF1-222	ENST00000583732	PDS5B	Q9NTI5	1447 aa		28.92	■■■□□ 2.22
SREBF1-222	ENST00000583732	CADPS	Q9ULU8	1353 aa		28.84	■■■□□ 2.21
SREBF1-222	ENST00000583732	MRC2	Q9UBG0	1479 aa		28.72	■■■□□ 2.19
SREBF1-222	ENST00000583732	RSF1	Q96T23	1441 aa	Predicted RBP	28.68	■■■□□ 2.18
SREBF1-222	ENST00000583732	WDR62	O43379	1518 aa		28.65	■■■□□ 2.18
SREBF1-222	ENST00000583732	CEP164	Q9UPV0	1460 aa		28.62	■■■□□ 2.17
SREBF1-222	ENST00000583732	TOP2A	P11388	1531 aa	Known RBP	28.62	■■■□□ 2.17
SREBF1-222	ENST00000583732	FANCD2	Q9BXW9	1451 aa		28.57	■■■□□ 2.16
SREBF1-222	ENST00000583732	CFTR	P13569	1480 aa		28.52	■■■□□ 2.16
SREBF1-222	ENST00000583732	PRDM2	Q13029	1718 aa		28.38	■■■□□ 2.13
SREBF1-222	ENST00000583732	URB2	Q14146	1524 aa	Known RBP	28.35	■■■□□ 2.13
SREBF1-222	ENST00000583732	CCDC88B	A6NC98	1476 aa		28.27	■■■□□ 2.12
SREBF1-222	ENST00000583732	TRIM41	Q8WV44	630 aa		28.2	■■■□□ 2.1
SREBF1-222	ENST00000583732	TOPBP1	Q92547	1522 aa		28.03	■■■□□ 2.08
SREBF1-222	ENST00000583732	OSCAR	Q8IYS5	282 aa		28.03	■■■□□ 2.08
SREBF1-222	ENST00000583732	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.01	■■■□□ 2.07
SREBF1-222	ENST00000583732	IFT140	Q96RY7	1462 aa		28.01	■■■□□ 2.07
SREBF1-222	ENST00000583732	DNMBP	Q6XZF7	1577 aa		27.94	■■■□□ 2.06
SREBF1-222	ENST00000583732	EIF4G3	O43432	1585 aa	Known RBP	27.9	■■■□□ 2.06
SREBF1-222	ENST00000583732	ABCC8	Q09428	1581 aa		27.9	■■■□□ 2.06
SREBF1-222	ENST00000583732	TARBP1	Q13395	1621 aa	Known RBP	27.8	■■■□□ 2.04
SREBF1-222	ENST00000583732	RIMBP3C	A6NJZ7	1639 aa		27.79	■■■□□ 2.04
SREBF1-222	ENST00000583732	RIMBP3B	A6NNM3	1639 aa		27.79	■■■□□ 2.04
SREBF1-222	ENST00000583732	RIMBP3	Q9UFD9	1639 aa		27.79	■■■□□ 2.04
SREBF1-222	ENST00000583732	POLA1	P09884	1462 aa	Predicted RBP	27.75	■■■□□ 2.03
SREBF1-222	ENST00000583732	AQR	O60306	1485 aa	Known RBP eCLIP	27.74	■■■□□ 2.03	8e-19	■■□□□ 11.4
SREBF1-222	ENST00000583732	CHD1	O14646	1710 aa		27.73	■■■□□ 2.03
SREBF1-222	ENST00000583732	RAD54L2	Q9Y4B4	1467 aa		27.67	■■■□□ 2.02
SREBF1-222	ENST00000583732	ARHGEF11	O15085	1522 aa		27.67	■■■□□ 2.02
SREBF1-222	ENST00000583732	SOGA1	O94964	1423 aa		27.59	■■■□□ 2.01
SREBF1-222	ENST00000583732	FGD5	Q6ZNL6	1462 aa		27.59	■■■□□ 2.01
SREBF1-222	ENST00000583732	FBLN2	P98095	1184 aa		27.57	■■■□□ 2
SREBF1-222	ENST00000583732	CUX1	P39880	1505 aa		27.57	■■■□□ 2
SREBF1-222	ENST00000583732	TDRD9	Q8NDG6	1382 aa	Known RBP	27.56	■■■□□ 2
SREBF1-222	ENST00000583732	SNAPC4	Q5SXM2	1469 aa		27.49	■■□□□ 1.99
SREBF1-222	ENST00000583732	WDR97	A6NE52	1622 aa		27.48	■■□□□ 1.99
SREBF1-222	ENST00000583732	SUPT5H	O00267	1087 aa	Known RBP	27.46	■■□□□ 1.99
SREBF1-222	ENST00000583732	CYB5RL	Q6IPT4	315 aa		27.42	■■□□□ 1.98
SREBF1-222	ENST00000583732	ARAP1	Q96P48	1450 aa		27.39	■■□□□ 1.98
SREBF1-222	ENST00000583732	PBRM1	Q86U86	1689 aa		27.37	■■□□□ 1.97
SREBF1-222	ENST00000583732	GRIN2B	Q13224	1484 aa		27.36	■■□□□ 1.97
SREBF1-222	ENST00000583732	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.36	■■□□□ 1.97
SREBF1-222	ENST00000583732	CLASP1	Q7Z460	1538 aa		27.33	■■□□□ 1.97
SREBF1-222	ENST00000583732	SYNJ1	O43426	1573 aa		27.32	■■□□□ 1.96
SREBF1-222	ENST00000583732	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.32	■■□□□ 1.96
SREBF1-222	ENST00000583732	SYNJ2	O15056	1496 aa		27.27	■■□□□ 1.96
SREBF1-222	ENST00000583732	GAPVD1	Q14C86	1478 aa		27.27	■■□□□ 1.96
SREBF1-222	ENST00000583732	ABCA5	Q8WWZ7	1642 aa		27.25	■■□□□ 1.95
SREBF1-222	ENST00000583732	ABCA10	Q8WWZ4	1543 aa		27.23	■■□□□ 1.95
SREBF1-222	ENST00000583732	TRH	P20396	242 aa	Predicted RBP	27.17	■■□□□ 1.94
SREBF1-222	ENST00000583732	BIVM-ERCC5	R4GMW8	1640 aa		27.14	■■□□□ 1.94
SREBF1-222	ENST00000583732	TOP2B	Q02880	1626 aa		27.11	■■□□□ 1.93
SREBF1-222	ENST00000583732	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.1	■■□□□ 1.93	3e-9	■■■■■ 32
SREBF1-222	ENST00000583732	ADAMTS12	P58397	1594 aa		27.06	■■□□□ 1.92
SREBF1-222	ENST00000583732	GRIN2A	Q12879	1464 aa		27.03	■■□□□ 1.92
SREBF1-222	ENST00000583732	CEP170	Q5SW79	1584 aa		26.97	■■□□□ 1.91
SREBF1-222	ENST00000583732	ERCC6L2	Q5T890	1561 aa		26.95	■■□□□ 1.9
SREBF1-222	ENST00000583732	FHAD1	B1AJZ9	1412 aa		26.9	■■□□□ 1.9
SREBF1-222	ENST00000583732	NUP160	Q12769	1436 aa		26.9	■■□□□ 1.9
SREBF1-222	ENST00000583732	ERICH3	Q5RHP9	1530 aa		26.9	■■□□□ 1.9
SREBF1-222	ENST00000583732	SHROOM2	Q13796	1616 aa		26.83	■■□□□ 1.88
SREBF1-222	ENST00000583732	RUSC2	Q8N2Y8	1516 aa		26.68	■■□□□ 1.86
SREBF1-222	ENST00000583732	PRG4	Q92954	1404 aa	Predicted RBP	26.67	■■□□□ 1.86
SREBF1-222	ENST00000583732	JPH4	Q96JJ6	628 aa		26.6	■■□□□ 1.85
SREBF1-222	ENST00000583732	CUL7	Q14999	1698 aa		26.56	■■□□□ 1.84

Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms