RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 NISCHQ9Y2I1 1504 aa28.64■■■□□ 2.17
CDK5RAP3-217ENST00000580287 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
CDK5RAP3-217ENST00000580287 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
CDK5RAP3-217ENST00000580287 ZCCHC6Q5VYS8 1495 aaKnown RBP23.99■■□□□ 1.43
CDK5RAP3-217ENST00000580287 ABCC9O60706 1549 aa23.96■■□□□ 1.43
CDK5RAP3-217ENST00000580287 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
CDK5RAP3-217ENST00000580287 DCAF1Q9Y4B6 1507 aa23.49■■□□□ 1.35
CDK5RAP3-217ENST00000580287 MYO15BQ96JP2 1530 aa23.22■■□□□ 1.31
CDK5RAP3-217ENST00000580287 NACADO15069 1562 aa23.22■■□□□ 1.31
CDK5RAP3-217ENST00000580287 SCRIBQ14160 1630 aa23.08■■□□□ 1.29
CDK5RAP3-217ENST00000580287 RB1CC1Q8TDY2 1594 aa23.07■■□□□ 1.28
CDK5RAP3-217ENST00000580287 PABPN1Q86U42 306 aaKnown RBP eCLIP22.72■■□□□ 1.232e-10■■□□□ 14.3
CDK5RAP3-217ENST00000580287 SUPT5HO00267 1087 aaKnown RBP22.7■■□□□ 1.22
CDK5RAP3-217ENST00000580287 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
CDK5RAP3-217ENST00000580287 BICRAQ9NZM4 1560 aa22.47■■□□□ 1.19
CDK5RAP3-217ENST00000580287 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
CDK5RAP3-217ENST00000580287 RSF1Q96T23 1441 aaPredicted RBP22.26■■□□□ 1.15
CDK5RAP3-217ENST00000580287 MROH2BQ7Z745 1585 aa22.21■■□□□ 1.15
CDK5RAP3-217ENST00000580287 BAZ1AQ9NRL2 1556 aaPredicted RBP22.06■■□□□ 1.12
CDK5RAP3-217ENST00000580287 SMARCA4P51532 1647 aa22■■□□□ 1.11
CDK5RAP3-217ENST00000580287 WIZO95785 1651 aa22■■□□□ 1.11
CDK5RAP3-217ENST00000580287 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
CDK5RAP3-217ENST00000580287 ATAD2BQ9ULI0 1458 aa21.74■■□□□ 1.07
CDK5RAP3-217ENST00000580287 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
CDK5RAP3-217ENST00000580287 PEG3Q9GZU2 1588 aa21.64■■□□□ 1.05
CDK5RAP3-217ENST00000580287 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
CDK5RAP3-217ENST00000580287 BAZ1BQ9UIG0 1483 aaKnown RBP21.6■■□□□ 1.05
CDK5RAP3-217ENST00000580287 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
CDK5RAP3-217ENST00000580287 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
CDK5RAP3-217ENST00000580287 CC2D2AQ9P2K1 1620 aa21.53■■□□□ 1.04
CDK5RAP3-217ENST00000580287 NCAPD3P42695 1498 aa21.52■■□□□ 1.04
CDK5RAP3-217ENST00000580287 DNAJC5BQ9UF47 199 aa21.41■■□□□ 1.02
CDK5RAP3-217ENST00000580287 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
CDK5RAP3-217ENST00000580287 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
CDK5RAP3-217ENST00000580287 ABCC8Q09428 1581 aa21.13■□□□□ 0.97
CDK5RAP3-217ENST00000580287 CFTRP13569 1480 aa21.03■□□□□ 0.96
CDK5RAP3-217ENST00000580287 CADPSQ9ULU8 1353 aa21.03■□□□□ 0.96
CDK5RAP3-217ENST00000580287 FAM9AQ8IZU1 332 aaPredicted RBP21.02■□□□□ 0.96
CDK5RAP3-217ENST00000580287 NESP48681 1621 aa21.01■□□□□ 0.95
CDK5RAP3-217ENST00000580287 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
CDK5RAP3-217ENST00000580287 LOC105371045A0A1W2PR82 267 aa20.88■□□□□ 0.93
CDK5RAP3-217ENST00000580287 EHMT2Q96KQ7 1210 aa20.87■□□□□ 0.93
CDK5RAP3-217ENST00000580287 SYNJ1O43426 1573 aa20.84■□□□□ 0.93
CDK5RAP3-217ENST00000580287 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
CDK5RAP3-217ENST00000580287 SOGA1O94964 1423 aa20.76■□□□□ 0.91
CDK5RAP3-217ENST00000580287 CUX1P39880 1505 aa20.74■□□□□ 0.91
CDK5RAP3-217ENST00000580287 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
CDK5RAP3-217ENST00000580287 RUSC2Q8N2Y8 1516 aa20.71■□□□□ 0.91
CDK5RAP3-217ENST00000580287 PDS5BQ9NTI5 1447 aa20.67■□□□□ 0.9
CDK5RAP3-217ENST00000580287 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
CDK5RAP3-217ENST00000580287 PRDM2Q13029 1718 aa20.66■□□□□ 0.9
CDK5RAP3-217ENST00000580287 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
CDK5RAP3-217ENST00000580287 BIVM-ERCC5R4GMW8 1640 aa20.59■□□□□ 0.89
CDK5RAP3-217ENST00000580287 KIF21AQ7Z4S6 1674 aa20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 URB2Q14146 1524 aaKnown RBP20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
CDK5RAP3-217ENST00000580287 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
CDK5RAP3-217ENST00000580287 TOPBP1Q92547 1522 aa20.54■□□□□ 0.88
CDK5RAP3-217ENST00000580287 RAD54L2Q9Y4B4 1467 aa20.49■□□□□ 0.87
CDK5RAP3-217ENST00000580287 DNMBPQ6XZF7 1577 aa20.48■□□□□ 0.87
CDK5RAP3-217ENST00000580287 ERCC6Q03468 1493 aa20.48■□□□□ 0.87
CDK5RAP3-217ENST00000580287 POLA1P09884 1462 aaPredicted RBP20.46■□□□□ 0.87
CDK5RAP3-217ENST00000580287 CUX2O14529 1486 aa20.43■□□□□ 0.86
CDK5RAP3-217ENST00000580287 EEA1Q15075 1411 aa20.42■□□□□ 0.86
CDK5RAP3-217ENST00000580287 MRC2Q9UBG0 1479 aa20.39■□□□□ 0.86
CDK5RAP3-217ENST00000580287 KIF27Q86VH2 1401 aa20.39■□□□□ 0.85
CDK5RAP3-217ENST00000580287 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
CDK5RAP3-217ENST00000580287 TDRD9Q8NDG6 1382 aaKnown RBP20.35■□□□□ 0.85
CDK5RAP3-217ENST00000580287 PCGF6Q9BYE7 350 aa20.32■□□□□ 0.84
CDK5RAP3-217ENST00000580287 IGF1RP08069 1367 aa20.3■□□□□ 0.84
CDK5RAP3-217ENST00000580287 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
CDK5RAP3-217ENST00000580287 RANGAP1P46060 587 aaPredicted RBP20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 SLC24A1O60721 1099 aa20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 ABCA10Q8WWZ4 1543 aa20.28■□□□□ 0.84
CDK5RAP3-217ENST00000580287 WDR62O43379 1518 aa20.25■□□□□ 0.83
CDK5RAP3-217ENST00000580287 GOLGA3Q08378 1498 aa20.23■□□□□ 0.83
CDK5RAP3-217ENST00000580287 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
CDK5RAP3-217ENST00000580287 PRXQ9BXM0 1461 aa20.21■□□□□ 0.83
CDK5RAP3-217ENST00000580287 AQRO60306 1485 aaKnown RBP eCLIP20.21■□□□□ 0.831e-7■■■■□ 24.7
CDK5RAP3-217ENST00000580287 TARBP1Q13395 1621 aaKnown RBP20.19■□□□□ 0.82
CDK5RAP3-217ENST00000580287 CARMIL1Q5VZK9 1371 aa20.19■□□□□ 0.82
CDK5RAP3-217ENST00000580287 ZNF608Q9ULD9 1512 aaPredicted RBP20.18■□□□□ 0.82
CDK5RAP3-217ENST00000580287 TNIKQ9UKE5 1360 aa20.17■□□□□ 0.82
CDK5RAP3-217ENST00000580287 KIF21BO75037 1637 aa20.16■□□□□ 0.82
CDK5RAP3-217ENST00000580287 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
CDK5RAP3-217ENST00000580287 WDR97A6NE52 1622 aa20.12■□□□□ 0.81
CDK5RAP3-217ENST00000580287 CEP162Q5TB80 1403 aa20.12■□□□□ 0.81
CDK5RAP3-217ENST00000580287 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
CDK5RAP3-217ENST00000580287 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.81
CDK5RAP3-217ENST00000580287 HRCP23327 699 aa20.08■□□□□ 0.8
CDK5RAP3-217ENST00000580287 ERICH3Q5RHP9 1530 aa20.04■□□□□ 0.8
CDK5RAP3-217ENST00000580287 PPARGC1BQ86YN6 1023 aaKnown RBP20.02■□□□□ 0.79
CDK5RAP3-217ENST00000580287 CLIP1P30622 1438 aa19.99■□□□□ 0.79
CDK5RAP3-217ENST00000580287 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
CDK5RAP3-217ENST00000580287 EIF4G3O43432 1585 aaKnown RBP19.95■□□□□ 0.78
CDK5RAP3-217ENST00000580287 FBLN2P98095 1184 aa19.95■□□□□ 0.78
CDK5RAP3-217ENST00000580287 SNAPC4Q5SXM2 1469 aa19.92■□□□□ 0.78
CDK5RAP3-217ENST00000580287 P3H3Q8IVL6 736 aa19.92■□□□□ 0.78
CDK5RAP3-217ENST00000580287 CUL7Q14999 1698 aa19.91■□□□□ 0.78
CDK5RAP3-217ENST00000580287 PBRM1Q86U86 1689 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms