RNA–Protein interactions for RNA: ENST00000580019.1

KPNB1-208, Transcript of karyopherin subunit beta 1, humanhuman

TSL 2

Gene KPNB1, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNB1-208ENST00000580019 AEBP2Q6ZN18 517 aaPredicted RBP23.96■■□□□ 1.43
KPNB1-208ENST00000580019 CHIC1Q5VXU3 224 aa22.47■■□□□ 1.19
KPNB1-208ENST00000580019 SENP3Q9H4L4 574 aaPredicted RBP20.64■□□□□ 0.89
KPNB1-208ENST00000580019 PHF23Q9BUL5 403 aaPredicted RBP20.23■□□□□ 0.83
KPNB1-208ENST00000580019 FOXD1Q16676 465 aa19.28■□□□□ 0.68
KPNB1-208ENST00000580019 POTEDQ86YR6 584 aa19.2■□□□□ 0.66
KPNB1-208ENST00000580019 MSH5O43196 834 aa18.4■□□□□ 0.54
KPNB1-208ENST00000580019 PIAS4Q8N2W9 510 aaPredicted RBP17.86■□□□□ 0.45
KPNB1-208ENST00000580019 PPP6R1Q9UPN7 881 aa17.4■□□□□ 0.38
KPNB1-208ENST00000580019 ADRA2BP18089 450 aa17.33■□□□□ 0.36
KPNB1-208ENST00000580019 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
KPNB1-208ENST00000580019 CACNB1Q02641 598 aaPredicted RBP16.25■□□□□ 0.19
KPNB1-208ENST00000580019 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
KPNB1-208ENST00000580019 MAPK8IP2Q13387 824 aaPredicted RBP16.13■□□□□ 0.17
KPNB1-208ENST00000580019 SCAF1Q9H7N4 1312 aaKnown RBP15.94■□□□□ 0.14
KPNB1-208ENST00000580019 DCAF8L1A6NGE4 600 aa15.62■□□□□ 0.09
KPNB1-208ENST00000580019 RNF39Q9H2S5 420 aa15.59■□□□□ 0.09
KPNB1-208ENST00000580019 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
KPNB1-208ENST00000580019 HOXD11P31277 338 aaPredicted RBP15.33■□□□□ 0.04
KPNB1-208ENST00000580019 PPP4R3CPQ6ZMV5 832 aa15.05■□□□□ -0
KPNB1-208ENST00000580019 RNF216Q9NWF9 866 aaPredicted RBP15.02■□□□□ -0
KPNB1-208ENST00000580019 DNAJC5BQ9UF47 199 aa14.99□□□□□ -0.01
KPNB1-208ENST00000580019 CNKSR2Q8WXI2 1034 aa14.97□□□□□ -0.01
KPNB1-208ENST00000580019 POTEHQ6S545 545 aa14.92□□□□□ -0.02
KPNB1-208ENST00000580019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
KPNB1-208ENST00000580019 DSG3P32926 999 aa14.34□□□□□ -0.11
KPNB1-208ENST00000580019 NCBP3Q53F19 620 aaKnown RBP14.29□□□□□ -0.12
KPNB1-208ENST00000580019 CAPN15O75808 1086 aa14.27□□□□□ -0.13
KPNB1-208ENST00000580019 SPINK5Q9NQ38 1064 aaPredicted RBP14.21□□□□□ -0.13
KPNB1-208ENST00000580019 U3KPZ7 1027 aaPredicted RBP14.2□□□□□ -0.14
KPNB1-208ENST00000580019 NPM3O75607 178 aaKnown RBP14.02□□□□□ -0.17
KPNB1-208ENST00000580019 TRHP20396 242 aaPredicted RBP13.84□□□□□ -0.19
KPNB1-208ENST00000580019 ABCB7O75027 752 aa13.83□□□□□ -0.2
KPNB1-208ENST00000580019 APLP2Q06481 763 aa13.83□□□□□ -0.2
KPNB1-208ENST00000580019 ZNF219Q9P2Y4 722 aaPredicted RBP13.82□□□□□ -0.2
KPNB1-208ENST00000580019 RBM42Q9BTD8 480 aaKnown RBP13.77□□□□□ -0.21
KPNB1-208ENST00000580019 CHRDL2Q6WN34 429 aa13.72□□□□□ -0.21
KPNB1-208ENST00000580019 SP7Q8TDD2 431 aaPredicted RBP13.63□□□□□ -0.23
KPNB1-208ENST00000580019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.6□□□□□ -0.23
KPNB1-208ENST00000580019 HNRNPUL2Q1KMD3 747 aaKnown RBP13.6□□□□□ -0.23
KPNB1-208ENST00000580019 SLC4A2P04920 1241 aa13.56□□□□□ -0.24
KPNB1-208ENST00000580019 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
KPNB1-208ENST00000580019 POLA2Q14181 598 aa13.28□□□□□ -0.28
KPNB1-208ENST00000580019 AKT1S1Q96B36 256 aa13.26□□□□□ -0.29
KPNB1-208ENST00000580019 HAX1O00165 279 aa13.22□□□□□ -0.29
KPNB1-208ENST00000580019 PIP4P2Q8N4L2 257 aa13.22□□□□□ -0.29
KPNB1-208ENST00000580019 REM2Q8IYK8 340 aaPredicted RBP13.12□□□□□ -0.31
KPNB1-208ENST00000580019 KCNA4P22459 653 aa13.05□□□□□ -0.32
KPNB1-208ENST00000580019 MYCNP04198 464 aaPredicted RBP13.02□□□□□ -0.33
KPNB1-208ENST00000580019 FXR2P51116 673 aaKnown RBP eCLIP13.02□□□□□ -0.33
KPNB1-208ENST00000580019 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
KPNB1-208ENST00000580019 PITPNM1O00562 1244 aa12.97□□□□□ -0.33
KPNB1-208ENST00000580019 EVX2Q03828 476 aa12.92□□□□□ -0.34
KPNB1-208ENST00000580019 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
KPNB1-208ENST00000580019 LHX8Q68G74 356 aa12.78□□□□□ -0.36
KPNB1-208ENST00000580019 ATF5Q9Y2D1 282 aaPredicted RBP12.71□□□□□ -0.37
KPNB1-208ENST00000580019 C19orf67A6NJJ6 358 aa12.64□□□□□ -0.39
KPNB1-208ENST00000580019 PRKAR2AP13861 404 aaKnown RBP12.64□□□□□ -0.39
KPNB1-208ENST00000580019 GABBR2O75899 941 aa12.63□□□□□ -0.39
KPNB1-208ENST00000580019 PLSCR2Q9NRY7 297 aa12.61□□□□□ -0.39
KPNB1-208ENST00000580019 SPDYE2BA6NHP3 402 aa12.53□□□□□ -0.4
KPNB1-208ENST00000580019 SPDYE6P0CI01 402 aa12.53□□□□□ -0.4
KPNB1-208ENST00000580019 SPDYE2Q495Y8 402 aa12.53□□□□□ -0.4
KPNB1-208ENST00000580019 SPDYE1Q8NFV5 336 aaPredicted RBP12.51□□□□□ -0.41
KPNB1-208ENST00000580019 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
KPNB1-208ENST00000580019 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
KPNB1-208ENST00000580019 FBLN2P98095 1184 aa12.37□□□□□ -0.43
KPNB1-208ENST00000580019 POTEIP0CG38 1075 aa12.33□□□□□ -0.44
KPNB1-208ENST00000580019 CHADLQ6NUI6 762 aa12.31□□□□□ -0.44
KPNB1-208ENST00000580019 CLCN6P51797 869 aa12.25□□□□□ -0.45
KPNB1-208ENST00000580019 ZNF692Q9BU19 519 aaPredicted RBP12.24□□□□□ -0.45
KPNB1-208ENST00000580019 SSUH2Q9Y2M2 353 aa12.24□□□□□ -0.45
KPNB1-208ENST00000580019 CD44P16070 742 aaKnown RBP12.21□□□□□ -0.45
KPNB1-208ENST00000580019 SLC4A1APQ9BWU0 796 aaKnown RBP12.21□□□□□ -0.45
KPNB1-208ENST00000580019 PRR29P0C7W0 189 aa12.2□□□□□ -0.46
KPNB1-208ENST00000580019 ATXN8OSP0DMR3 200 aa12.18□□□□□ -0.46
KPNB1-208ENST00000580019 DCBLD2Q96PD2 775 aa12.17□□□□□ -0.46
KPNB1-208ENST00000580019 MKRN4PQ13434 485 aaPredicted RBP12.09□□□□□ -0.47
KPNB1-208ENST00000580019 FARP1Q9Y4F1 1045 aaPredicted RBP12.08□□□□□ -0.48
KPNB1-208ENST00000580019 POTEMA6NI47 508 aa12.07□□□□□ -0.48
KPNB1-208ENST00000580019 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
KPNB1-208ENST00000580019 OTUD5Q96G74 571 aa12.03□□□□□ -0.48
KPNB1-208ENST00000580019 POTEGQ6S5H5 508 aa12.01□□□□□ -0.49
KPNB1-208ENST00000580019 ZNF579Q8NAF0 562 aaKnown RBP11.98□□□□□ -0.49
KPNB1-208ENST00000580019 PCDH10Q9P2E7 1040 aa11.97□□□□□ -0.49
KPNB1-208ENST00000580019 ZBTB22O15209 634 aa11.95□□□□□ -0.5
KPNB1-208ENST00000580019 ZRANB1Q9UGI0 708 aa11.91□□□□□ -0.5
KPNB1-208ENST00000580019 POTEB2H3BUK9 544 aa11.89□□□□□ -0.51
KPNB1-208ENST00000580019 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
KPNB1-208ENST00000580019 PAK3O75914 559 aaPredicted RBP11.7□□□□□ -0.54
KPNB1-208ENST00000580019 MAMSTRQ6ZN01 415 aa11.68□□□□□ -0.54
KPNB1-208ENST00000580019 PELP1Q8IZL8 1130 aaKnown RBP11.68□□□□□ -0.54
KPNB1-208ENST00000580019 CREBZFQ9NS37 354 aa11.68□□□□□ -0.54
KPNB1-208ENST00000580019 PHF12Q96QT6 1004 aa11.66□□□□□ -0.54
KPNB1-208ENST00000580019 METRNQ9UJH8 293 aa11.65□□□□□ -0.54
KPNB1-208ENST00000580019 LCE2DQ5TA82 110 aaPredicted RBP11.62□□□□□ -0.55
KPNB1-208ENST00000580019 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
KPNB1-208ENST00000580019 C7P10643 843 aa11.61□□□□□ -0.55
KPNB1-208ENST00000580019 SLC39A7Q92504 469 aa11.61□□□□□ -0.55
KPNB1-208ENST00000580019 POTEJP0CG39 1038 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms