RNA–Protein interactions for RNA: ENST00000579611.1

CDC42EP4-204, Transcript of CDC42 effector protein 4, humanhuman

TSL 4

Gene CDC42EP4, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-204ENST00000579611 NISCHQ9Y2I1 1504 aa41.86■■■■■ 4.29
CDC42EP4-204ENST00000579611 CCDC180Q9P1Z9 1646 aa37.3■■■■□ 3.56
CDC42EP4-204ENST00000579611 ABCC9O60706 1549 aa36.85■■■■□ 3.49
CDC42EP4-204ENST00000579611 RB1CC1Q8TDY2 1594 aa35.32■■■■□ 3.24
CDC42EP4-204ENST00000579611 NACADO15069 1562 aa35.24■■■■□ 3.23
CDC42EP4-204ENST00000579611 DCAF8L2P0C7V8 631 aa35.04■■■■□ 3.2
CDC42EP4-204ENST00000579611 MYO15BQ96JP2 1530 aa35.01■■■■□ 3.19
CDC42EP4-204ENST00000579611 ZCCHC6Q5VYS8 1495 aaKnown RBP34.79■■■■□ 3.16
CDC42EP4-204ENST00000579611 DCAF1Q9Y4B6 1507 aa34.69■■■■□ 3.14
CDC42EP4-204ENST00000579611 PABPN1Q86U42 306 aaKnown RBP eCLIP34.42■■■■□ 3.1
CDC42EP4-204ENST00000579611 UNC13AQ9UPW8 1703 aa34.35■■■■□ 3.09
CDC42EP4-204ENST00000579611 BICRAQ9NZM4 1560 aa34.27■■■■□ 3.08
CDC42EP4-204ENST00000579611 DNAJC5BQ9UF47 199 aa34.26■■■■□ 3.08
CDC42EP4-204ENST00000579611 SHROOM4Q9ULL8 1493 aa33.99■■■■□ 3.03
CDC42EP4-204ENST00000579611 SCRIBQ14160 1630 aa33.94■■■■□ 3.02
CDC42EP4-204ENST00000579611 EIF4G1Q04637 1599 aaKnown RBP33.39■■■□□ 2.94
CDC42EP4-204ENST00000579611 CC2D2AQ9P2K1 1620 aa33.31■■■□□ 2.92
CDC42EP4-204ENST00000579611 CECR2Q9BXF3 1484 aa33.21■■■□□ 2.91
CDC42EP4-204ENST00000579611 NCAPD3P42695 1498 aa32.59■■■□□ 2.81
CDC42EP4-204ENST00000579611 ATAD2BQ9ULI0 1458 aa32.49■■■□□ 2.79
CDC42EP4-204ENST00000579611 SMARCA4P51532 1647 aa32.49■■■□□ 2.79
CDC42EP4-204ENST00000579611 BAZ1AQ9NRL2 1556 aaPredicted RBP32.45■■■□□ 2.79
CDC42EP4-204ENST00000579611 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
CDC42EP4-204ENST00000579611 HMGXB3Q12766 1538 aa32.32■■■□□ 2.76
CDC42EP4-204ENST00000579611 PEG3Q9GZU2 1588 aa32.28■■■□□ 2.76
CDC42EP4-204ENST00000579611 MROH2BQ7Z745 1585 aa32.22■■■□□ 2.75
CDC42EP4-204ENST00000579611 BAZ1BQ9UIG0 1483 aaKnown RBP32.16■■■□□ 2.74
CDC42EP4-204ENST00000579611 ERCC6Q03468 1493 aa31.8■■■□□ 2.68
CDC42EP4-204ENST00000579611 NESP48681 1621 aa31.78■■■□□ 2.68
CDC42EP4-204ENST00000579611 RSF1Q96T23 1441 aaPredicted RBP31.78■■■□□ 2.68
CDC42EP4-204ENST00000579611 WIZO95785 1651 aa31.76■■■□□ 2.68
CDC42EP4-204ENST00000579611 LAMC3Q9Y6N6 1575 aa31.68■■■□□ 2.66
CDC42EP4-204ENST00000579611 CUX2O14529 1486 aa31.67■■■□□ 2.66
CDC42EP4-204ENST00000579611 CADPSQ9ULU8 1353 aa31.6■■■□□ 2.65
CDC42EP4-204ENST00000579611 PDS5BQ9NTI5 1447 aa31.55■■■□□ 2.64
CDC42EP4-204ENST00000579611 TOP2AP11388 1531 aaKnown RBP31.49■■■□□ 2.63
CDC42EP4-204ENST00000579611 THOC2Q8NI27 1593 aaKnown RBP31.37■■■□□ 2.61
CDC42EP4-204ENST00000579611 CFTRP13569 1480 aa31.33■■■□□ 2.61
CDC42EP4-204ENST00000579611 KIF21AQ7Z4S6 1674 aa31.29■■■□□ 2.6
CDC42EP4-204ENST00000579611 MRC2Q9UBG0 1479 aa31.21■■■□□ 2.59
CDC42EP4-204ENST00000579611 DNAJC5Q9H3Z4 198 aa31.19■■■□□ 2.58
CDC42EP4-204ENST00000579611 FANCD2Q9BXW9 1451 aa31.17■■■□□ 2.58
CDC42EP4-204ENST00000579611 CCDC88BA6NC98 1476 aa31.15■■■□□ 2.58
CDC42EP4-204ENST00000579611 CEP164Q9UPV0 1460 aa31.14■■■□□ 2.58
CDC42EP4-204ENST00000579611 WDR62O43379 1518 aa31.11■■■□□ 2.57
CDC42EP4-204ENST00000579611 URB2Q14146 1524 aaKnown RBP30.87■■■□□ 2.53
CDC42EP4-204ENST00000579611 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
CDC42EP4-204ENST00000579611 ABCC8Q09428 1581 aa30.66■■■□□ 2.5
CDC42EP4-204ENST00000579611 TOPBP1Q92547 1522 aa30.63■■■□□ 2.49
CDC42EP4-204ENST00000579611 SUPT5HO00267 1087 aaKnown RBP30.6■■■□□ 2.49
CDC42EP4-204ENST00000579611 IFT140Q96RY7 1462 aa30.56■■■□□ 2.48
CDC42EP4-204ENST00000579611 DNMBPQ6XZF7 1577 aa30.54■■■□□ 2.48
CDC42EP4-204ENST00000579611 ZNF608Q9ULD9 1512 aaPredicted RBP30.41■■■□□ 2.46
CDC42EP4-204ENST00000579611 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
CDC42EP4-204ENST00000579611 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
CDC42EP4-204ENST00000579611 TARBP1Q13395 1621 aaKnown RBP30.3■■■□□ 2.44
CDC42EP4-204ENST00000579611 CUX1P39880 1505 aa30.24■■■□□ 2.43
CDC42EP4-204ENST00000579611 SOGA1O94964 1423 aa30.23■■■□□ 2.43
CDC42EP4-204ENST00000579611 EIF4G3O43432 1585 aaKnown RBP30.2■■■□□ 2.43
CDC42EP4-204ENST00000579611 AQRO60306 1485 aaKnown RBP eCLIP30.2■■■□□ 2.43
CDC42EP4-204ENST00000579611 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
CDC42EP4-204ENST00000579611 RAD54L2Q9Y4B4 1467 aa30.19■■■□□ 2.42
CDC42EP4-204ENST00000579611 TDRD9Q8NDG6 1382 aaKnown RBP30.1■■■□□ 2.41
CDC42EP4-204ENST00000579611 WDR97A6NE52 1622 aa30.08■■■□□ 2.41
CDC42EP4-204ENST00000579611 WRNQ14191 1432 aaPredicted RBP eCLIP29.95■■■□□ 2.38
CDC42EP4-204ENST00000579611 ABCA10Q8WWZ4 1543 aa29.94■■■□□ 2.38
CDC42EP4-204ENST00000579611 GRIN2BQ13224 1484 aa29.93■■■□□ 2.38
CDC42EP4-204ENST00000579611 MAGI1Q96QZ7 1491 aaPredicted RBP29.89■■■□□ 2.38
CDC42EP4-204ENST00000579611 SNAPC4Q5SXM2 1469 aa29.88■■■□□ 2.37
CDC42EP4-204ENST00000579611 FBLN2P98095 1184 aa29.88■■■□□ 2.37
CDC42EP4-204ENST00000579611 TOP2BQ02880 1626 aa29.88■■■□□ 2.37
CDC42EP4-204ENST00000579611 GAPVD1Q14C86 1478 aa29.87■■■□□ 2.37
CDC42EP4-204ENST00000579611 TRIM41Q8WV44 630 aa29.85■■■□□ 2.37
CDC42EP4-204ENST00000579611 BIVM-ERCC5R4GMW8 1640 aa29.84■■■□□ 2.37
CDC42EP4-204ENST00000579611 CHD1O14646 1710 aa29.82■■■□□ 2.36
CDC42EP4-204ENST00000579611 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
CDC42EP4-204ENST00000579611 CHMP7Q8WUX9 453 aaPredicted RBP29.8■■■□□ 2.36
CDC42EP4-204ENST00000579611 SYNJ2O15056 1496 aa29.78■■■□□ 2.36
CDC42EP4-204ENST00000579611 ABCA5Q8WWZ7 1642 aa29.78■■■□□ 2.36
CDC42EP4-204ENST00000579611 ARHGEF11O15085 1522 aa29.76■■■□□ 2.35
CDC42EP4-204ENST00000579611 RIMBP3CA6NJZ7 1639 aa29.74■■■□□ 2.35
CDC42EP4-204ENST00000579611 RIMBP3BA6NNM3 1639 aa29.74■■■□□ 2.35
CDC42EP4-204ENST00000579611 RIMBP3Q9UFD9 1639 aa29.74■■■□□ 2.35
CDC42EP4-204ENST00000579611 PBRM1Q86U86 1689 aa29.66■■■□□ 2.34
CDC42EP4-204ENST00000579611 CLASP1Q7Z460 1538 aa29.64■■■□□ 2.34
CDC42EP4-204ENST00000579611 ERICH3Q5RHP9 1530 aa29.55■■■□□ 2.32
CDC42EP4-204ENST00000579611 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
CDC42EP4-204ENST00000579611 CYB5RLQ6IPT4 315 aa29.53■■■□□ 2.32
CDC42EP4-204ENST00000579611 GRIN2AQ12879 1464 aa29.52■■■□□ 2.32
CDC42EP4-204ENST00000579611 ADAMTS12P58397 1594 aa29.51■■■□□ 2.31
CDC42EP4-204ENST00000579611 ARAP1Q96P48 1450 aa29.5■■■□□ 2.31
CDC42EP4-204ENST00000579611 NUP160Q12769 1436 aa29.46■■■□□ 2.31
CDC42EP4-204ENST00000579611 KIF27Q86VH2 1401 aa29.37■■■□□ 2.29
CDC42EP4-204ENST00000579611 IGF1RP08069 1367 aa29.34■■■□□ 2.29
CDC42EP4-204ENST00000579611 CEP170Q5SW79 1584 aa29.34■■■□□ 2.29
CDC42EP4-204ENST00000579611 SHROOM2Q13796 1616 aa29.2■■■□□ 2.27
CDC42EP4-204ENST00000579611 JPH4Q96JJ6 628 aa29.16■■■□□ 2.26
CDC42EP4-204ENST00000579611 ERCC6L2Q5T890 1561 aa29.14■■■□□ 2.26
CDC42EP4-204ENST00000579611 CUL7Q14999 1698 aa29.14■■■□□ 2.26
CDC42EP4-204ENST00000579611 CARMIL1Q5VZK9 1371 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms