RNA–Protein interactions for RNA: ENST00000579609.5

PPP4R1-213, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 565 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-213ENST00000579609 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
PPP4R1-213ENST00000579609 CHIC1Q5VXU3 224 aa20.35■□□□□ 0.85
PPP4R1-213ENST00000579609 NISCHQ9Y2I1 1504 aa19.48■□□□□ 0.71
PPP4R1-213ENST00000579609 PHF23Q9BUL5 403 aaPredicted RBP18■□□□□ 0.47
PPP4R1-213ENST00000579609 SENP3Q9H4L4 574 aaPredicted RBP17.19■□□□□ 0.34
PPP4R1-213ENST00000579609 CCDC180Q9P1Z9 1646 aa17.03■□□□□ 0.32
PPP4R1-213ENST00000579609 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
PPP4R1-213ENST00000579609 ZCCHC6Q5VYS8 1495 aaKnown RBP16.46■□□□□ 0.23
PPP4R1-213ENST00000579609 DCAF1Q9Y4B6 1507 aa16.31■□□□□ 0.2
PPP4R1-213ENST00000579609 MYO15BQ96JP2 1530 aa16.04■□□□□ 0.16
PPP4R1-213ENST00000579609 FOXD1Q16676 465 aa15.97■□□□□ 0.15
PPP4R1-213ENST00000579609 ADRA2BP18089 450 aa15.75■□□□□ 0.11
PPP4R1-213ENST00000579609 PPP6R1Q9UPN7 881 aa15.75■□□□□ 0.11
PPP4R1-213ENST00000579609 NACADO15069 1562 aa15.72■□□□□ 0.11
PPP4R1-213ENST00000579609 SHROOM4Q9ULL8 1493 aa15.71■□□□□ 0.11
PPP4R1-213ENST00000579609 DCAF8L2P0C7V8 631 aa15.58■□□□□ 0.08
PPP4R1-213ENST00000579609 ABCC9O60706 1549 aa15.48■□□□□ 0.07
PPP4R1-213ENST00000579609 RB1CC1Q8TDY2 1594 aa15.48■□□□□ 0.07
PPP4R1-213ENST00000579609 SCRIBQ14160 1630 aa15.4■□□□□ 0.06
PPP4R1-213ENST00000579609 SUPT5HO00267 1087 aaKnown RBP15.3■□□□□ 0.04
PPP4R1-213ENST00000579609 PIAS4Q8N2W9 510 aaPredicted RBP15.15■□□□□ 0.02
PPP4R1-213ENST00000579609 RSF1Q96T23 1441 aaPredicted RBP15.15■□□□□ 0.02
PPP4R1-213ENST00000579609 UNC13AQ9UPW8 1703 aa15.12■□□□□ 0.01
PPP4R1-213ENST00000579609 BAZ1AQ9NRL2 1556 aaPredicted RBP15.08■□□□□ 0
PPP4R1-213ENST00000579609 KCNA4P22459 653 aa14.99□□□□□ -0.01
PPP4R1-213ENST00000579609 MROH2BQ7Z745 1585 aa14.95□□□□□ -0.02
PPP4R1-213ENST00000579609 CECR2Q9BXF3 1484 aa14.95□□□□□ -0.02
PPP4R1-213ENST00000579609 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
PPP4R1-213ENST00000579609 BICRAQ9NZM4 1560 aa14.91□□□□□ -0.02
PPP4R1-213ENST00000579609 WIZO95785 1651 aa14.86□□□□□ -0.03
PPP4R1-213ENST00000579609 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
PPP4R1-213ENST00000579609 TOP2AP11388 1531 aaKnown RBP14.84□□□□□ -0.03
PPP4R1-213ENST00000579609 PPP4R3CPQ6ZMV5 832 aa14.79□□□□□ -0.04
PPP4R1-213ENST00000579609 EIF4G1Q04637 1599 aaKnown RBP14.73□□□□□ -0.05
PPP4R1-213ENST00000579609 SMARCA2P51531 1590 aa14.66□□□□□ -0.06
PPP4R1-213ENST00000579609 CCDC88BA6NC98 1476 aa14.57□□□□□ -0.08
PPP4R1-213ENST00000579609 ATAD2BQ9ULI0 1458 aa14.55□□□□□ -0.08
PPP4R1-213ENST00000579609 HMGXB3Q12766 1538 aa14.53□□□□□ -0.08
PPP4R1-213ENST00000579609 TRIM41Q8WV44 630 aa14.51□□□□□ -0.09
PPP4R1-213ENST00000579609 PABPN1Q86U42 306 aaKnown RBP eCLIP14.49□□□□□ -0.09
PPP4R1-213ENST00000579609 BAZ1BQ9UIG0 1483 aaKnown RBP14.49□□□□□ -0.09
PPP4R1-213ENST00000579609 MSH5O43196 834 aa14.47□□□□□ -0.09
PPP4R1-213ENST00000579609 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
PPP4R1-213ENST00000579609 NCAPD3P42695 1498 aa14.45□□□□□ -0.1
PPP4R1-213ENST00000579609 NCBP3Q53F19 620 aaKnown RBP14.45□□□□□ -0.1
PPP4R1-213ENST00000579609 EEA1Q15075 1411 aa14.41□□□□□ -0.1
PPP4R1-213ENST00000579609 NPM3O75607 178 aaKnown RBP14.33□□□□□ -0.12
PPP4R1-213ENST00000579609 PRDM2Q13029 1718 aa14.3□□□□□ -0.12
PPP4R1-213ENST00000579609 SLC4A1APQ9BWU0 796 aaKnown RBP14.3□□□□□ -0.12
PPP4R1-213ENST00000579609 ABCC8Q09428 1581 aa14.29□□□□□ -0.12
PPP4R1-213ENST00000579609 WRNQ14191 1432 aaPredicted RBP eCLIP14.27□□□□□ -0.12
PPP4R1-213ENST00000579609 SCAF1Q9H7N4 1312 aaKnown RBP14.27□□□□□ -0.12
PPP4R1-213ENST00000579609 CNKSR2Q8WXI2 1034 aa14.24□□□□□ -0.13
PPP4R1-213ENST00000579609 DNAJC5BQ9UF47 199 aa14.24□□□□□ -0.13
PPP4R1-213ENST00000579609 BIVM-ERCC5R4GMW8 1640 aa14.23□□□□□ -0.13
PPP4R1-213ENST00000579609 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
PPP4R1-213ENST00000579609 LOC105371045A0A1W2PR82 267 aa14.21□□□□□ -0.13
PPP4R1-213ENST00000579609 CFTRP13569 1480 aa14.18□□□□□ -0.14
PPP4R1-213ENST00000579609 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
PPP4R1-213ENST00000579609 MAPK8IP2Q13387 824 aaPredicted RBP14.18□□□□□ -0.14
PPP4R1-213ENST00000579609 KIF21BO75037 1637 aa14.15□□□□□ -0.14
PPP4R1-213ENST00000579609 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
PPP4R1-213ENST00000579609 TNIKQ9UKE5 1360 aa14.1□□□□□ -0.15
PPP4R1-213ENST00000579609 GOLGA3Q08378 1498 aa14.09□□□□□ -0.15
PPP4R1-213ENST00000579609 CEP164Q9UPV0 1460 aa14.08□□□□□ -0.16
PPP4R1-213ENST00000579609 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
PPP4R1-213ENST00000579609 SOGA1O94964 1423 aa14.07□□□□□ -0.16
PPP4R1-213ENST00000579609 TRIM26Q12899 539 aaPredicted RBP14.05□□□□□ -0.16
PPP4R1-213ENST00000579609 FAM9AQ8IZU1 332 aaPredicted RBP14.04□□□□□ -0.16
PPP4R1-213ENST00000579609 ERICH3Q5RHP9 1530 aa14.03□□□□□ -0.16
PPP4R1-213ENST00000579609 CADPSQ9ULU8 1353 aa14.02□□□□□ -0.17
PPP4R1-213ENST00000579609 CUX1P39880 1505 aa13.99□□□□□ -0.17
PPP4R1-213ENST00000579609 CEP162Q5TB80 1403 aa13.97□□□□□ -0.17
PPP4R1-213ENST00000579609 LAMC3Q9Y6N6 1575 aa13.96□□□□□ -0.18
PPP4R1-213ENST00000579609 RUSC2Q8N2Y8 1516 aa13.95□□□□□ -0.18
PPP4R1-213ENST00000579609 HRCP23327 699 aa13.93□□□□□ -0.18
PPP4R1-213ENST00000579609 PCGF6Q9BYE7 350 aa13.93□□□□□ -0.18
PPP4R1-213ENST00000579609 KIF27Q86VH2 1401 aa13.92□□□□□ -0.18
PPP4R1-213ENST00000579609 PRXQ9BXM0 1461 aa13.91□□□□□ -0.18
PPP4R1-213ENST00000579609 DNMBPQ6XZF7 1577 aa13.88□□□□□ -0.19
PPP4R1-213ENST00000579609 RNF216Q9NWF9 866 aaPredicted RBP13.85□□□□□ -0.19
PPP4R1-213ENST00000579609 FANCD2Q9BXW9 1451 aa13.85□□□□□ -0.19
PPP4R1-213ENST00000579609 ZBTB22O15209 634 aa13.83□□□□□ -0.2
PPP4R1-213ENST00000579609 DMRT2Q9Y5R5 561 aa13.82□□□□□ -0.2
PPP4R1-213ENST00000579609 RAPGEF2Q9Y4G8 1499 aa13.81□□□□□ -0.2
PPP4R1-213ENST00000579609 CLIP1P30622 1438 aa13.81□□□□□ -0.2
PPP4R1-213ENST00000579609 UBTFP17480 764 aaKnown RBP13.8□□□□□ -0.2
PPP4R1-213ENST00000579609 ZEB1P37275 1124 aaPredicted RBP13.79□□□□□ -0.2
PPP4R1-213ENST00000579609 VPS8Q8N3P4 1428 aa13.79□□□□□ -0.2
PPP4R1-213ENST00000579609 FGD5Q6ZNL6 1462 aa13.79□□□□□ -0.2
PPP4R1-213ENST00000579609 ABCA10Q8WWZ4 1543 aa13.77□□□□□ -0.21
PPP4R1-213ENST00000579609 PDS5BQ9NTI5 1447 aa13.76□□□□□ -0.21
PPP4R1-213ENST00000579609 CUL7Q14999 1698 aa13.75□□□□□ -0.21
PPP4R1-213ENST00000579609 TOPBP1Q92547 1522 aa13.75□□□□□ -0.21
PPP4R1-213ENST00000579609 WDR97A6NE52 1622 aa13.75□□□□□ -0.21
PPP4R1-213ENST00000579609 CUX2O14529 1486 aa13.73□□□□□ -0.21
PPP4R1-213ENST00000579609 HOXD11P31277 338 aaPredicted RBP13.7□□□□□ -0.22
PPP4R1-213ENST00000579609 POLA1P09884 1462 aaPredicted RBP13.69□□□□□ -0.22
PPP4R1-213ENST00000579609 IGF1RP08069 1367 aa13.69□□□□□ -0.22
PPP4R1-213ENST00000579609 MAP3K1Q13233 1512 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 153.7 ms