RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 DCAF8L2P0C7V8 631 aa18.42■□□□□ 0.54
MSI2-209ENST00000579483 NISCHQ9Y2I1 1504 aa18.14■□□□□ 0.49
MSI2-209ENST00000579483 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
MSI2-209ENST00000579483 SHROOM4Q9ULL8 1493 aa16.76■□□□□ 0.27
MSI2-209ENST00000579483 FAM9AQ8IZU1 332 aaPredicted RBP16.69■□□□□ 0.26
MSI2-209ENST00000579483 APLP2Q06481 763 aa16.33■□□□□ 0.2
MSI2-209ENST00000579483 CCDC180Q9P1Z9 1646 aa16.11■□□□□ 0.17
MSI2-209ENST00000579483 EHMT2Q96KQ7 1210 aa16.06■□□□□ 0.16
MSI2-209ENST00000579483 ABCC9O60706 1549 aa15.92■□□□□ 0.14
MSI2-209ENST00000579483 TRIM41Q8WV44 630 aa15.9■□□□□ 0.14
MSI2-209ENST00000579483 ATP1B4Q9UN42 357 aaPredicted RBP15.78■□□□□ 0.12
MSI2-209ENST00000579483 UBTFP17480 764 aaKnown RBP15.72■□□□□ 0.11
MSI2-209ENST00000579483 RANGAP1P46060 587 aaPredicted RBP15.7■□□□□ 0.1
MSI2-209ENST00000579483 PABPN1Q86U42 306 aaKnown RBP eCLIP15.63■□□□□ 0.09
MSI2-209ENST00000579483 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
MSI2-209ENST00000579483 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
MSI2-209ENST00000579483 MYT1LQ9UL68 1186 aa15.46■□□□□ 0.07
MSI2-209ENST00000579483 TTBK1Q5TCY1 1321 aaPredicted RBP15.45■□□□□ 0.06
MSI2-209ENST00000579483 PELP1Q8IZL8 1130 aaKnown RBP15.34■□□□□ 0.05
MSI2-209ENST00000579483 NACADO15069 1562 aa15.25■□□□□ 0.03
MSI2-209ENST00000579483 RB1CC1Q8TDY2 1594 aa15.22■□□□□ 0.03
MSI2-209ENST00000579483 MYO15BQ96JP2 1530 aa15.22■□□□□ 0.03
MSI2-209ENST00000579483 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
MSI2-209ENST00000579483 PCGF6Q9BYE7 350 aa15.21■□□□□ 0.03
MSI2-209ENST00000579483 ZEB1P37275 1124 aaPredicted RBP15.18■□□□□ 0.02
MSI2-209ENST00000579483 CCER1Q8TC90 406 aaPredicted RBP15.16■□□□□ 0.02
MSI2-209ENST00000579483 FBLN2P98095 1184 aa15.15■□□□□ 0.02
MSI2-209ENST00000579483 SCRIBQ14160 1630 aa15.07■□□□□ 0
MSI2-209ENST00000579483 ZCCHC6Q5VYS8 1495 aaKnown RBP15.05■□□□□ 0
MSI2-209ENST00000579483 ITGAEP38570 1179 aa14.95□□□□□ -0.02
MSI2-209ENST00000579483 CHIC1Q5VXU3 224 aa14.94□□□□□ -0.02
MSI2-209ENST00000579483 NPM1P06748 294 aaKnown RBP eCLIP14.92□□□□□ -0.02
MSI2-209ENST00000579483 CDK11AQ9UQ88 783 aaPredicted RBP14.87□□□□□ -0.03
MSI2-209ENST00000579483 TRIM26Q12899 539 aaPredicted RBP14.8□□□□□ -0.04
MSI2-209ENST00000579483 PPARGC1BQ86YN6 1023 aaKnown RBP14.8□□□□□ -0.04
MSI2-209ENST00000579483 FAM50AQ14320 339 aaKnown RBP14.78□□□□□ -0.04
MSI2-209ENST00000579483 ESF1Q9H501 851 aaKnown RBP14.78□□□□□ -0.04
MSI2-209ENST00000579483 CENPBP07199 599 aaPredicted RBP14.77□□□□□ -0.05
MSI2-209ENST00000579483 TRIM52Q96A61 297 aa14.72□□□□□ -0.05
MSI2-209ENST00000579483 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
MSI2-209ENST00000579483 POLR3GLQ9BT43 218 aa14.72□□□□□ -0.05
MSI2-209ENST00000579483 LOC105371045A0A1W2PR82 267 aa14.69□□□□□ -0.06
MSI2-209ENST00000579483 SLC4A1APQ9BWU0 796 aaKnown RBP14.69□□□□□ -0.06
MSI2-209ENST00000579483 CHMP7Q8WUX9 453 aaPredicted RBP14.68□□□□□ -0.06
MSI2-209ENST00000579483 NEFLP07196 543 aa14.67□□□□□ -0.06
MSI2-209ENST00000579483 BCANQ96GW7 911 aa14.61□□□□□ -0.07
MSI2-209ENST00000579483 P3H3Q8IVL6 736 aa14.59□□□□□ -0.07
MSI2-209ENST00000579483 ERCC6Q03468 1493 aa14.59□□□□□ -0.07
MSI2-209ENST00000579483 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
MSI2-209ENST00000579483 ZNF777Q9ULD5 760 aaPredicted RBP14.55□□□□□ -0.08
MSI2-209ENST00000579483 ARID3CA6NKF2 412 aa14.53□□□□□ -0.08
MSI2-209ENST00000579483 STAG3Q9UJ98 1225 aa14.49□□□□□ -0.09
MSI2-209ENST00000579483 ERICH6Q7L0X2 663 aa14.43□□□□□ -0.1
MSI2-209ENST00000579483 BAZ1AQ9NRL2 1556 aaPredicted RBP14.4□□□□□ -0.1
MSI2-209ENST00000579483 TSPY4P0CV99 314 aa14.39□□□□□ -0.11
MSI2-209ENST00000579483 TSPY10P0CW01 314 aa14.39□□□□□ -0.11
MSI2-209ENST00000579483 ZNF326Q5BKZ1 582 aaKnown RBP14.39□□□□□ -0.11
MSI2-209ENST00000579483 NEFMP07197 916 aa14.37□□□□□ -0.11
MSI2-209ENST00000579483 NEUROD1Q13562 356 aa14.35□□□□□ -0.11
MSI2-209ENST00000579483 PLEKHD1A6NEE1 506 aa14.34□□□□□ -0.11
MSI2-209ENST00000579483 CNGB1Q14028 1251 aaPredicted RBP14.33□□□□□ -0.12
MSI2-209ENST00000579483 EEA1Q15075 1411 aa14.32□□□□□ -0.12
MSI2-209ENST00000579483 RSF1Q96T23 1441 aaPredicted RBP14.32□□□□□ -0.12
MSI2-209ENST00000579483 PDS5BQ9NTI5 1447 aa14.32□□□□□ -0.12
MSI2-209ENST00000579483 CHGAP10645 457 aaKnown RBP14.31□□□□□ -0.12
MSI2-209ENST00000579483 ACIN1Q9UKV3 1341 aaKnown RBP14.3□□□□□ -0.12
MSI2-209ENST00000579483 PLPPR3Q6T4P5 718 aa14.29□□□□□ -0.12
MSI2-209ENST00000579483 YTHDC1Q96MU7 727 aaKnown RBP14.29□□□□□ -0.12
MSI2-209ENST00000579483 MTUS2Q5JR59 1369 aa14.29□□□□□ -0.12
MSI2-209ENST00000579483 KIF27Q86VH2 1401 aa14.29□□□□□ -0.12
MSI2-209ENST00000579483 WRNQ14191 1432 aaPredicted RBP eCLIP14.27□□□□□ -0.13
MSI2-209ENST00000579483 SMARCA2P51531 1590 aa14.26□□□□□ -0.13
MSI2-209ENST00000579483 KCNH8Q96L42 1107 aa14.23□□□□□ -0.13
MSI2-209ENST00000579483 DAXXQ9UER7 740 aaPredicted RBP14.22□□□□□ -0.13
MSI2-209ENST00000579483 ARID4BQ4LE39 1312 aaPredicted RBP14.2□□□□□ -0.14
MSI2-209ENST00000579483 HRCP23327 699 aa14.19□□□□□ -0.14
MSI2-209ENST00000579483 TRHP20396 242 aaPredicted RBP14.19□□□□□ -0.14
MSI2-209ENST00000579483 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.18□□□□□ -0.14
MSI2-209ENST00000579483 ZBTB47Q9UFB7 747 aaPredicted RBP14.16□□□□□ -0.14
MSI2-209ENST00000579483 SLC24A1O60721 1099 aa14.16□□□□□ -0.14
MSI2-209ENST00000579483 CECR2Q9BXF3 1484 aa14.15□□□□□ -0.14
MSI2-209ENST00000579483 ANP32CO43423 234 aa14.14□□□□□ -0.15
MSI2-209ENST00000579483 PPP1R15AO75807 674 aaPredicted RBP14.13□□□□□ -0.15
MSI2-209ENST00000579483 CLIP1P30622 1438 aa14.12□□□□□ -0.15
MSI2-209ENST00000579483 GOLGA3Q08378 1498 aa14.11□□□□□ -0.15
MSI2-209ENST00000579483 TONSLQ96HA7 1378 aa14.1□□□□□ -0.15
MSI2-209ENST00000579483 CHIC2Q9UKJ5 165 aa14.08□□□□□ -0.16
MSI2-209ENST00000579483 CFDP1Q9UEE9 299 aaPredicted RBP14.08□□□□□ -0.16
MSI2-209ENST00000579483 CLSPNQ9HAW4 1339 aa14.07□□□□□ -0.16
MSI2-209ENST00000579483 CARMIL2Q6F5E8 1435 aa14.07□□□□□ -0.16
MSI2-209ENST00000579483 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
MSI2-209ENST00000579483 C14orf37Q86TY3 774 aa14.05□□□□□ -0.16
MSI2-209ENST00000579483 CADPSQ9ULU8 1353 aa14.02□□□□□ -0.16
MSI2-209ENST00000579483 CUX2O14529 1486 aa14.02□□□□□ -0.17
MSI2-209ENST00000579483 CARMIL1Q5VZK9 1371 aa14.01□□□□□ -0.17
MSI2-209ENST00000579483 HDGFP51858 240 aaKnown RBP13.99□□□□□ -0.17
MSI2-209ENST00000579483 CANXP27824 592 aaKnown RBP13.99□□□□□ -0.17
MSI2-209ENST00000579483 SOGA1O94964 1423 aa13.99□□□□□ -0.17
MSI2-209ENST00000579483 DIEXFQ68CQ4 756 aaKnown RBP13.98□□□□□ -0.17
MSI2-209ENST00000579483 FHAD1B1AJZ9 1412 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms