RNA–Protein interactions for RNA: ENST00000572778.5

CHMP6-204, Transcript of charged multivesicular body protein 6, humanhuman

TSL 2

Gene CHMP6, Length 737 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-204ENST00000572778 NISCHQ9Y2I1 1504 aa50.19■■■■■ 5.62
CHMP6-204ENST00000572778 CCDC180Q9P1Z9 1646 aa44.55■■■■■ 4.72
CHMP6-204ENST00000572778 ABCC9O60706 1549 aa43.88■■■■■ 4.61
CHMP6-204ENST00000572778 DCAF8L2P0C7V8 631 aa42.19■■■■■ 4.34
CHMP6-204ENST00000572778 RB1CC1Q8TDY2 1594 aa42.07■■■■■ 4.33
CHMP6-204ENST00000572778 NACADO15069 1562 aa41.99■■■■■ 4.31
CHMP6-204ENST00000572778 ZCCHC6Q5VYS8 1495 aaKnown RBP41.77■■■■■ 4.28
CHMP6-204ENST00000572778 MYO15BQ96JP2 1530 aa41.66■■■■■ 4.26
CHMP6-204ENST00000572778 DCAF1Q9Y4B6 1507 aa41.46■■■■■ 4.23
CHMP6-204ENST00000572778 PABPN1Q86U42 306 aaKnown RBP eCLIP41.05■■■■■ 4.16
CHMP6-204ENST00000572778 UNC13AQ9UPW8 1703 aa40.98■■■■■ 4.15
CHMP6-204ENST00000572778 BICRAQ9NZM4 1560 aa40.78■■■■■ 4.12
CHMP6-204ENST00000572778 SCRIBQ14160 1630 aa40.76■■■■■ 4.12
CHMP6-204ENST00000572778 DNAJC5BQ9UF47 199 aa40.39■■■■■ 4.06
CHMP6-204ENST00000572778 SHROOM4Q9ULL8 1493 aa40.31■■■■■ 4.04
CHMP6-204ENST00000572778 EIF4G1Q04637 1599 aaKnown RBP39.74■■■■□ 3.95
CHMP6-204ENST00000572778 CC2D2AQ9P2K1 1620 aa39.6■■■■□ 3.93
CHMP6-204ENST00000572778 CECR2Q9BXF3 1484 aa39.41■■■■□ 3.9
CHMP6-204ENST00000572778 SMARCA4P51532 1647 aa38.93■■■■□ 3.82
CHMP6-204ENST00000572778 BAZ1AQ9NRL2 1556 aaPredicted RBP38.89■■■■□ 3.82
CHMP6-204ENST00000572778 ATAD2BQ9ULI0 1458 aa38.8■■■■□ 3.8
CHMP6-204ENST00000572778 NCAPD3P42695 1498 aa38.78■■■■□ 3.8
CHMP6-204ENST00000572778 SMARCA2P51531 1590 aa38.71■■■■□ 3.79
CHMP6-204ENST00000572778 MROH2BQ7Z745 1585 aa38.7■■■■□ 3.79
CHMP6-204ENST00000572778 HMGXB3Q12766 1538 aa38.53■■■■□ 3.76
CHMP6-204ENST00000572778 PEG3Q9GZU2 1588 aa38.52■■■■□ 3.76
CHMP6-204ENST00000572778 BAZ1BQ9UIG0 1483 aaKnown RBP38.49■■■■□ 3.75
CHMP6-204ENST00000572778 WIZO95785 1651 aa38.24■■■■□ 3.71
CHMP6-204ENST00000572778 RSF1Q96T23 1441 aaPredicted RBP38.23■■■■□ 3.71
CHMP6-204ENST00000572778 NESP48681 1621 aa37.91■■■■□ 3.66
CHMP6-204ENST00000572778 ERCC6Q03468 1493 aa37.84■■■■□ 3.65
CHMP6-204ENST00000572778 TOP2AP11388 1531 aaKnown RBP37.83■■■■□ 3.65
CHMP6-204ENST00000572778 LAMC3Q9Y6N6 1575 aa37.73■■■■□ 3.63
CHMP6-204ENST00000572778 CADPSQ9ULU8 1353 aa37.68■■■■□ 3.62
CHMP6-204ENST00000572778 PDS5BQ9NTI5 1447 aa37.56■■■■□ 3.6
CHMP6-204ENST00000572778 CCDC88BA6NC98 1476 aa37.44■■■■□ 3.58
CHMP6-204ENST00000572778 CFTRP13569 1480 aa37.4■■■■□ 3.58
CHMP6-204ENST00000572778 CUX2O14529 1486 aa37.39■■■■□ 3.58
CHMP6-204ENST00000572778 KIF21AQ7Z4S6 1674 aa37.37■■■■□ 3.57
CHMP6-204ENST00000572778 SUPT5HO00267 1087 aaKnown RBP37.33■■■■□ 3.57
CHMP6-204ENST00000572778 THOC2Q8NI27 1593 aaKnown RBP37.27■■■■□ 3.56
CHMP6-204ENST00000572778 FANCD2Q9BXW9 1451 aa37.25■■■■□ 3.55
CHMP6-204ENST00000572778 CEP164Q9UPV0 1460 aa37.2■■■■□ 3.54
CHMP6-204ENST00000572778 MRC2Q9UBG0 1479 aa37.16■■■■□ 3.54
CHMP6-204ENST00000572778 WDR62O43379 1518 aa36.99■■■■□ 3.51
CHMP6-204ENST00000572778 PRDM2Q13029 1718 aa36.94■■■■□ 3.5
CHMP6-204ENST00000572778 URB2Q14146 1524 aaKnown RBP36.85■■■■□ 3.49
CHMP6-204ENST00000572778 TOPBP1Q92547 1522 aa36.62■■■■□ 3.45
CHMP6-204ENST00000572778 ABCC8Q09428 1581 aa36.59■■■■□ 3.45
CHMP6-204ENST00000572778 DNMBPQ6XZF7 1577 aa36.53■■■■□ 3.44
CHMP6-204ENST00000572778 DNAJC5Q9H3Z4 198 aa36.44■■■■□ 3.42
CHMP6-204ENST00000572778 IFT140Q96RY7 1462 aa36.42■■■■□ 3.42
CHMP6-204ENST00000572778 POLA1P09884 1462 aaPredicted RBP36.31■■■■□ 3.4
CHMP6-204ENST00000572778 CUX1P39880 1505 aa36.29■■■■□ 3.4
CHMP6-204ENST00000572778 ZNF608Q9ULD9 1512 aaPredicted RBP36.28■■■■□ 3.4
CHMP6-204ENST00000572778 SOGA1O94964 1423 aa36.21■■■■□ 3.39
CHMP6-204ENST00000572778 FGD5Q6ZNL6 1462 aa36.21■■■■□ 3.39
CHMP6-204ENST00000572778 RAD54L2Q9Y4B4 1467 aa36.18■■■■□ 3.38
CHMP6-204ENST00000572778 TARBP1Q13395 1621 aaKnown RBP36.17■■■■□ 3.38
CHMP6-204ENST00000572778 AQRO60306 1485 aaKnown RBP eCLIP36.09■■■■□ 3.375e-10■■■■■ 50.7
CHMP6-204ENST00000572778 WRNQ14191 1432 aaPredicted RBP eCLIP36.07■■■■□ 3.36
CHMP6-204ENST00000572778 EIF4G3O43432 1585 aaKnown RBP36.06■■■■□ 3.36
CHMP6-204ENST00000572778 TDRD9Q8NDG6 1382 aaKnown RBP36.03■■■■□ 3.36
CHMP6-204ENST00000572778 OSCARQ8IYS5 282 aa35.93■■■■□ 3.34
CHMP6-204ENST00000572778 SYNJ1O43426 1573 aa35.93■■■■□ 3.34
CHMP6-204ENST00000572778 TOP2BQ02880 1626 aa35.92■■■■□ 3.34
CHMP6-204ENST00000572778 BIVM-ERCC5R4GMW8 1640 aa35.89■■■■□ 3.34
CHMP6-204ENST00000572778 WDR97A6NE52 1622 aa35.84■■■■□ 3.33
CHMP6-204ENST00000572778 ABCA10Q8WWZ4 1543 aa35.83■■■■□ 3.33
CHMP6-204ENST00000572778 FBLN2P98095 1184 aa35.78■■■■□ 3.32
CHMP6-204ENST00000572778 GRIN2BQ13224 1484 aa35.76■■■■□ 3.32
CHMP6-204ENST00000572778 GAPVD1Q14C86 1478 aa35.75■■■■□ 3.31
CHMP6-204ENST00000572778 SNAPC4Q5SXM2 1469 aa35.73■■■■□ 3.31
CHMP6-204ENST00000572778 ABCA5Q8WWZ7 1642 aa35.65■■■■□ 3.3
CHMP6-204ENST00000572778 MAGI1Q96QZ7 1491 aaPredicted RBP35.64■■■■□ 3.3
CHMP6-204ENST00000572778 CHMP7Q8WUX9 453 aaPredicted RBP35.62■■■■□ 3.29
CHMP6-204ENST00000572778 CHD1O14646 1710 aa35.59■■■■□ 3.29
CHMP6-204ENST00000572778 PBRM1Q86U86 1689 aa35.57■■■■□ 3.28
CHMP6-204ENST00000572778 SYNJ2O15056 1496 aa35.53■■■■□ 3.28
CHMP6-204ENST00000572778 ERICH3Q5RHP9 1530 aa35.38■■■■□ 3.25
CHMP6-204ENST00000572778 FHAD1B1AJZ9 1412 aa35.33■■■■□ 3.25
CHMP6-204ENST00000572778 KIF27Q86VH2 1401 aa35.33■■■■□ 3.25
CHMP6-204ENST00000572778 ADAMTS12P58397 1594 aa35.33■■■■□ 3.25
CHMP6-204ENST00000572778 TRIM41Q8WV44 630 aa35.31■■■■□ 3.24
CHMP6-204ENST00000572778 GRIN2AQ12879 1464 aa35.29■■■■□ 3.24
CHMP6-204ENST00000572778 ARHGEF11O15085 1522 aa35.27■■■■□ 3.24
CHMP6-204ENST00000572778 RIMBP3CA6NJZ7 1639 aa35.25■■■■□ 3.23
CHMP6-204ENST00000572778 RIMBP3BA6NNM3 1639 aa35.25■■■■□ 3.23
CHMP6-204ENST00000572778 RIMBP3Q9UFD9 1639 aa35.25■■■■□ 3.23
CHMP6-204ENST00000572778 CLASP1Q7Z460 1538 aa35.24■■■■□ 3.23
CHMP6-204ENST00000572778 IGF1RP08069 1367 aa35.21■■■■□ 3.23
CHMP6-204ENST00000572778 NUP160Q12769 1436 aa35.12■■■■□ 3.21
CHMP6-204ENST00000572778 CEP170Q5SW79 1584 aa35.08■■■■□ 3.21
CHMP6-204ENST00000572778 CYB5RLQ6IPT4 315 aa35.07■■■■□ 3.2
CHMP6-204ENST00000572778 CARMIL1Q5VZK9 1371 aa35.01■■■■□ 3.2
CHMP6-204ENST00000572778 CUL7Q14999 1698 aa35.01■■■■□ 3.19
CHMP6-204ENST00000572778 ARAP1Q96P48 1450 aa34.98■■■■□ 3.19
CHMP6-204ENST00000572778 RUSC2Q8N2Y8 1516 aa34.98■■■■□ 3.19
CHMP6-204ENST00000572778 JPH4Q96JJ6 628 aa34.85■■■■□ 3.17
CHMP6-204ENST00000572778 ERCC6L2Q5T890 1561 aa34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms