RNA–Protein interactions for RNA: ENST00000567572.5

CMTM3-214, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 1,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-214ENST00000567572 NISCHQ9Y2I1 1504 aa38.91■■■■□ 3.82
CMTM3-214ENST00000567572 CCDC180Q9P1Z9 1646 aa33.79■■■■□ 3
CMTM3-214ENST00000567572 ZCCHC6Q5VYS8 1495 aaKnown RBP32.77■■■□□ 2.84
CMTM3-214ENST00000567572 DCAF1Q9Y4B6 1507 aa32.18■■■□□ 2.74
CMTM3-214ENST00000567572 DCAF8L2P0C7V8 631 aa31.92■■■□□ 2.7
CMTM3-214ENST00000567572 SHROOM4Q9ULL8 1493 aa31.92■■■□□ 2.7
CMTM3-214ENST00000567572 MYO15BQ96JP2 1530 aa31.68■■■□□ 2.66
CMTM3-214ENST00000567572 ABCC9O60706 1549 aa31.65■■■□□ 2.66
CMTM3-214ENST00000567572 NACADO15069 1562 aa31.38■■■□□ 2.61
CMTM3-214ENST00000567572 SCRIBQ14160 1630 aa31.12■■■□□ 2.57
CMTM3-214ENST00000567572 RB1CC1Q8TDY2 1594 aa31.03■■■□□ 2.56
CMTM3-214ENST00000567572 SUPT5HO00267 1087 aaKnown RBP30.83■■■□□ 2.53
CMTM3-214ENST00000567572 UNC13AQ9UPW8 1703 aa30.47■■■□□ 2.47
CMTM3-214ENST00000567572 RSF1Q96T23 1441 aaPredicted RBP30.3■■■□□ 2.44
CMTM3-214ENST00000567572 CECR2Q9BXF3 1484 aa30.22■■■□□ 2.43
CMTM3-214ENST00000567572 BICRAQ9NZM4 1560 aa30.14■■■□□ 2.42
CMTM3-214ENST00000567572 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
CMTM3-214ENST00000567572 BAZ1AQ9NRL2 1556 aaPredicted RBP30.01■■■□□ 2.39
CMTM3-214ENST00000567572 PABPN1Q86U42 306 aaKnown RBP eCLIP29.88■■■□□ 2.37
CMTM3-214ENST00000567572 WIZO95785 1651 aa29.86■■■□□ 2.37
CMTM3-214ENST00000567572 SMARCA4P51532 1647 aa29.86■■■□□ 2.37
CMTM3-214ENST00000567572 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
CMTM3-214ENST00000567572 TOP2AP11388 1531 aaKnown RBP29.55■■■□□ 2.32
CMTM3-214ENST00000567572 PEG3Q9GZU2 1588 aa29.5■■■□□ 2.31
CMTM3-214ENST00000567572 SMARCA2P51531 1590 aa29.3■■■□□ 2.28
CMTM3-214ENST00000567572 ATAD2BQ9ULI0 1458 aa29.27■■■□□ 2.28
CMTM3-214ENST00000567572 CCDC88BA6NC98 1476 aa29.24■■■□□ 2.27
CMTM3-214ENST00000567572 EIF4G1Q04637 1599 aaKnown RBP29.23■■■□□ 2.27
CMTM3-214ENST00000567572 BAZ1BQ9UIG0 1483 aaKnown RBP29.11■■■□□ 2.25
CMTM3-214ENST00000567572 HMGXB3Q12766 1538 aa28.97■■■□□ 2.23
CMTM3-214ENST00000567572 TRIM41Q8WV44 630 aa28.96■■■□□ 2.23
CMTM3-214ENST00000567572 NCAPD3P42695 1498 aa28.96■■■□□ 2.23
CMTM3-214ENST00000567572 ABCC8Q09428 1581 aa28.74■■■□□ 2.19
CMTM3-214ENST00000567572 CC2D2AQ9P2K1 1620 aa28.67■■■□□ 2.18
CMTM3-214ENST00000567572 HRCP23327 699 aa28.63■■■□□ 2.17
CMTM3-214ENST00000567572 LOC105371045A0A1W2PR82 267 aa28.61■■■□□ 2.17
CMTM3-214ENST00000567572 WRNQ14191 1432 aaPredicted RBP eCLIP28.5■■■□□ 2.15
CMTM3-214ENST00000567572 PCGF6Q9BYE7 350 aa28.49■■■□□ 2.15
CMTM3-214ENST00000567572 FAM9AQ8IZU1 332 aaPredicted RBP28.44■■■□□ 2.14
CMTM3-214ENST00000567572 CFTRP13569 1480 aa28.41■■■□□ 2.14
CMTM3-214ENST00000567572 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
CMTM3-214ENST00000567572 PRDM2Q13029 1718 aa28.31■■■□□ 2.12
CMTM3-214ENST00000567572 TRIM26Q12899 539 aaPredicted RBP28.3■■■□□ 2.12
CMTM3-214ENST00000567572 TOP2BQ02880 1626 aa28.26■■■□□ 2.11
CMTM3-214ENST00000567572 SOGA1O94964 1423 aa28.26■■■□□ 2.11
CMTM3-214ENST00000567572 EEA1Q15075 1411 aa28.24■■■□□ 2.11
CMTM3-214ENST00000567572 BIVM-ERCC5R4GMW8 1640 aa28.23■■■□□ 2.11
CMTM3-214ENST00000567572 CADPSQ9ULU8 1353 aa28.23■■■□□ 2.11
CMTM3-214ENST00000567572 RUSC2Q8N2Y8 1516 aa28.14■■■□□ 2.1
CMTM3-214ENST00000567572 CUX1P39880 1505 aa28.11■■■□□ 2.09
CMTM3-214ENST00000567572 CSRNP3Q8WYN3 585 aa28.03■■■□□ 2.08
CMTM3-214ENST00000567572 EHMT2Q96KQ7 1210 aa28.02■■■□□ 2.08
CMTM3-214ENST00000567572 FANCD2Q9BXW9 1451 aa27.93■■■□□ 2.06
CMTM3-214ENST00000567572 LAMC3Q9Y6N6 1575 aa27.93■■■□□ 2.06
CMTM3-214ENST00000567572 NESP48681 1621 aa27.91■■■□□ 2.06
CMTM3-214ENST00000567572 KIF21BO75037 1637 aa27.9■■■□□ 2.06
CMTM3-214ENST00000567572 GOLGA3Q08378 1498 aa27.88■■■□□ 2.05
CMTM3-214ENST00000567572 DNAJC5BQ9UF47 199 aa27.85■■■□□ 2.05
CMTM3-214ENST00000567572 CEP164Q9UPV0 1460 aa27.85■■■□□ 2.05
CMTM3-214ENST00000567572 TNIKQ9UKE5 1360 aa27.84■■■□□ 2.05
CMTM3-214ENST00000567572 ZEB1P37275 1124 aaPredicted RBP27.8■■■□□ 2.04
CMTM3-214ENST00000567572 DNMBPQ6XZF7 1577 aa27.75■■■□□ 2.03
CMTM3-214ENST00000567572 FGD5Q6ZNL6 1462 aa27.74■■■□□ 2.03
CMTM3-214ENST00000567572 CEP162Q5TB80 1403 aa27.73■■■□□ 2.03
CMTM3-214ENST00000567572 KIF27Q86VH2 1401 aa27.73■■■□□ 2.03
CMTM3-214ENST00000567572 TOPBP1Q92547 1522 aa27.68■■■□□ 2.02
CMTM3-214ENST00000567572 RAPGEF2Q9Y4G8 1499 aa27.68■■■□□ 2.02
CMTM3-214ENST00000567572 PDS5BQ9NTI5 1447 aa27.67■■■□□ 2.02
CMTM3-214ENST00000567572 UBTFP17480 764 aaKnown RBP27.67■■■□□ 2.02
CMTM3-214ENST00000567572 PRXQ9BXM0 1461 aa27.66■■■□□ 2.02
CMTM3-214ENST00000567572 ERICH3Q5RHP9 1530 aa27.65■■■□□ 2.02
CMTM3-214ENST00000567572 PPARGC1BQ86YN6 1023 aaKnown RBP27.65■■■□□ 2.02
CMTM3-214ENST00000567572 CUX2O14529 1486 aa27.6■■■□□ 2.01
CMTM3-214ENST00000567572 URB2Q14146 1524 aaKnown RBP27.59■■■□□ 2.01
CMTM3-214ENST00000567572 KIF21AQ7Z4S6 1674 aa27.59■■■□□ 2.01
CMTM3-214ENST00000567572 POLA1P09884 1462 aaPredicted RBP27.57■■■□□ 2
CMTM3-214ENST00000567572 ABCA10Q8WWZ4 1543 aa27.51■■□□□ 1.99
CMTM3-214ENST00000567572 RAD54L2Q9Y4B4 1467 aa27.47■■□□□ 1.99
CMTM3-214ENST00000567572 IGF1RP08069 1367 aa27.47■■□□□ 1.99
CMTM3-214ENST00000567572 CLIP1P30622 1438 aa27.43■■□□□ 1.98
CMTM3-214ENST00000567572 WDR97A6NE52 1622 aa27.43■■□□□ 1.98
CMTM3-214ENST00000567572 MRC2Q9UBG0 1479 aa27.33■■□□□ 1.97
CMTM3-214ENST00000567572 CARMIL1Q5VZK9 1371 aa27.32■■□□□ 1.96
CMTM3-214ENST00000567572 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
CMTM3-214ENST00000567572 TARBP1Q13395 1621 aaKnown RBP27.26■■□□□ 1.95
CMTM3-214ENST00000567572 CUL7Q14999 1698 aa27.26■■□□□ 1.95
CMTM3-214ENST00000567572 VPS8Q8N3P4 1428 aa27.25■■□□□ 1.95
CMTM3-214ENST00000567572 WDR62O43379 1518 aa27.2■■□□□ 1.94
CMTM3-214ENST00000567572 GAPVD1Q14C86 1478 aa27.17■■□□□ 1.94
CMTM3-214ENST00000567572 ARAP1Q96P48 1450 aa27.17■■□□□ 1.94
CMTM3-214ENST00000567572 TDRD9Q8NDG6 1382 aaKnown RBP27.15■■□□□ 1.94
CMTM3-214ENST00000567572 RANGAP1P46060 587 aaPredicted RBP27.13■■□□□ 1.93
CMTM3-214ENST00000567572 ARHGAP35Q9NRY4 1499 aa27.09■■□□□ 1.93
CMTM3-214ENST00000567572 ERCC6Q03468 1493 aa27.07■■□□□ 1.92
CMTM3-214ENST00000567572 THOC2Q8NI27 1593 aaKnown RBP27.06■■□□□ 1.92
CMTM3-214ENST00000567572 IFT140Q96RY7 1462 aa27.03■■□□□ 1.92
CMTM3-214ENST00000567572 PBRM1Q86U86 1689 aa27.02■■□□□ 1.92
CMTM3-214ENST00000567572 CTTNBP2Q8WZ74 1663 aa27■■□□□ 1.91
CMTM3-214ENST00000567572 CCER1Q8TC90 406 aaPredicted RBP26.96■■□□□ 1.91
CMTM3-214ENST00000567572 AQRO60306 1485 aaKnown RBP eCLIP26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms