RNA–Protein interactions for RNA: ENST00000566398.1

CPNE7-208, Transcript of copine 7, humanhuman

TSL 3

Gene CPNE7, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE7-208ENST00000566398 NISCHQ9Y2I1 1504 aa46.63■■■■■ 5.05
CPNE7-208ENST00000566398 CCDC180Q9P1Z9 1646 aa41.55■■■■■ 4.24
CPNE7-208ENST00000566398 ABCC9O60706 1549 aa41.06■■■■■ 4.16
CPNE7-208ENST00000566398 RB1CC1Q8TDY2 1594 aa39.33■■■■□ 3.89
CPNE7-208ENST00000566398 NACADO15069 1562 aa39.2■■■■□ 3.87
CPNE7-208ENST00000566398 DCAF8L2P0C7V8 631 aa39.13■■■■□ 3.85
CPNE7-208ENST00000566398 MYO15BQ96JP2 1530 aa38.86■■■■□ 3.81
CPNE7-208ENST00000566398 ZCCHC6Q5VYS8 1495 aaKnown RBP38.79■■■■□ 3.8
CPNE7-208ENST00000566398 DCAF1Q9Y4B6 1507 aa38.57■■■■□ 3.76
CPNE7-208ENST00000566398 PABPN1Q86U42 306 aaKnown RBP eCLIP38.33■■■■□ 3.73
CPNE7-208ENST00000566398 UNC13AQ9UPW8 1703 aa38.25■■■■□ 3.71
CPNE7-208ENST00000566398 BICRAQ9NZM4 1560 aa38.1■■■■□ 3.69
CPNE7-208ENST00000566398 DNAJC5BQ9UF47 199 aa37.96■■■■□ 3.67
CPNE7-208ENST00000566398 SCRIBQ14160 1630 aa37.94■■■■□ 3.66
CPNE7-208ENST00000566398 SHROOM4Q9ULL8 1493 aa37.77■■■■□ 3.64
CPNE7-208ENST00000566398 EIF4G1Q04637 1599 aaKnown RBP37.17■■■■□ 3.54
CPNE7-208ENST00000566398 CC2D2AQ9P2K1 1620 aa37.08■■■■□ 3.53
CPNE7-208ENST00000566398 CECR2Q9BXF3 1484 aa36.94■■■■□ 3.5
CPNE7-208ENST00000566398 SMARCA4P51532 1647 aa36.23■■■■□ 3.39
CPNE7-208ENST00000566398 NCAPD3P42695 1498 aa36.19■■■■□ 3.38
CPNE7-208ENST00000566398 BAZ1AQ9NRL2 1556 aaPredicted RBP36.18■■■■□ 3.38
CPNE7-208ENST00000566398 ATAD2BQ9ULI0 1458 aa36.17■■■■□ 3.38
CPNE7-208ENST00000566398 SMARCA2P51531 1590 aa36.1■■■■□ 3.37
CPNE7-208ENST00000566398 HMGXB3Q12766 1538 aa35.98■■■■□ 3.35
CPNE7-208ENST00000566398 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
CPNE7-208ENST00000566398 PEG3Q9GZU2 1588 aa35.88■■■■□ 3.33
CPNE7-208ENST00000566398 BAZ1BQ9UIG0 1483 aaKnown RBP35.86■■■■□ 3.33
CPNE7-208ENST00000566398 WIZO95785 1651 aa35.46■■■■□ 3.27
CPNE7-208ENST00000566398 ERCC6Q03468 1493 aa35.46■■■■□ 3.27
CPNE7-208ENST00000566398 RSF1Q96T23 1441 aaPredicted RBP35.41■■■■□ 3.26
CPNE7-208ENST00000566398 NESP48681 1621 aa35.41■■■■□ 3.26
CPNE7-208ENST00000566398 LAMC3Q9Y6N6 1575 aa35.26■■■■□ 3.24
CPNE7-208ENST00000566398 CUX2O14529 1486 aa35.18■■■■□ 3.22
CPNE7-208ENST00000566398 TOP2AP11388 1531 aaKnown RBP35.14■■■■□ 3.22
CPNE7-208ENST00000566398 CADPSQ9ULU8 1353 aa35.13■■■■□ 3.21
CPNE7-208ENST00000566398 PDS5BQ9NTI5 1447 aa35.1■■■■□ 3.21
CPNE7-208ENST00000566398 THOC2Q8NI27 1593 aaKnown RBP34.93■■■■□ 3.18
CPNE7-208ENST00000566398 KIF21AQ7Z4S6 1674 aa34.89■■■■□ 3.18
CPNE7-208ENST00000566398 CFTRP13569 1480 aa34.84■■■■□ 3.17
CPNE7-208ENST00000566398 MRC2Q9UBG0 1479 aa34.75■■■■□ 3.15
CPNE7-208ENST00000566398 FANCD2Q9BXW9 1451 aa34.73■■■■□ 3.15
CPNE7-208ENST00000566398 CEP164Q9UPV0 1460 aa34.73■■■■□ 3.15
CPNE7-208ENST00000566398 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
CPNE7-208ENST00000566398 WDR62O43379 1518 aa34.62■■■■□ 3.13
CPNE7-208ENST00000566398 DNAJC5Q9H3Z4 198 aa34.48■■■■□ 3.11
CPNE7-208ENST00000566398 URB2Q14146 1524 aaKnown RBP34.39■■■■□ 3.1
CPNE7-208ENST00000566398 PRDM2Q13029 1718 aa34.38■■■■□ 3.09
CPNE7-208ENST00000566398 SUPT5HO00267 1087 aaKnown RBP34.27■■■■□ 3.08
CPNE7-208ENST00000566398 TOPBP1Q92547 1522 aa34.12■■■■□ 3.05
CPNE7-208ENST00000566398 ABCC8Q09428 1581 aa34.1■■■■□ 3.05
CPNE7-208ENST00000566398 DNMBPQ6XZF7 1577 aa34.04■■■■□ 3.04
CPNE7-208ENST00000566398 IFT140Q96RY7 1462 aa34.01■■■■□ 3.04
CPNE7-208ENST00000566398 ZNF608Q9ULD9 1512 aaPredicted RBP33.87■■■■□ 3.01
CPNE7-208ENST00000566398 POLA1P09884 1462 aaPredicted RBP33.82■■■■□ 3
CPNE7-208ENST00000566398 TARBP1Q13395 1621 aaKnown RBP33.73■■■□□ 2.99
CPNE7-208ENST00000566398 CUX1P39880 1505 aa33.73■■■□□ 2.99
CPNE7-208ENST00000566398 EIF4G3O43432 1585 aaKnown RBP33.7■■■□□ 2.99
CPNE7-208ENST00000566398 FGD5Q6ZNL6 1462 aa33.69■■■□□ 2.98
CPNE7-208ENST00000566398 SOGA1O94964 1423 aa33.67■■■□□ 2.98
CPNE7-208ENST00000566398 RAD54L2Q9Y4B4 1467 aa33.67■■■□□ 2.98
CPNE7-208ENST00000566398 OSCARQ8IYS5 282 aa33.66■■■□□ 2.98
CPNE7-208ENST00000566398 AQRO60306 1485 aaKnown RBP eCLIP33.63■■■□□ 2.972e-8■■■□□ 15.3
CPNE7-208ENST00000566398 TDRD9Q8NDG6 1382 aaKnown RBP33.54■■■□□ 2.96
CPNE7-208ENST00000566398 WDR97A6NE52 1622 aa33.47■■■□□ 2.95
CPNE7-208ENST00000566398 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
CPNE7-208ENST00000566398 ABCA10Q8WWZ4 1543 aa33.34■■■□□ 2.93
CPNE7-208ENST00000566398 GRIN2BQ13224 1484 aa33.34■■■□□ 2.93
CPNE7-208ENST00000566398 SNAPC4Q5SXM2 1469 aa33.34■■■□□ 2.93
CPNE7-208ENST00000566398 FBLN2P98095 1184 aa33.34■■■□□ 2.93
CPNE7-208ENST00000566398 TOP2BQ02880 1626 aa33.33■■■□□ 2.93
CPNE7-208ENST00000566398 SYNJ1O43426 1573 aa33.3■■■□□ 2.92
CPNE7-208ENST00000566398 BIVM-ERCC5R4GMW8 1640 aa33.29■■■□□ 2.92
CPNE7-208ENST00000566398 GAPVD1Q14C86 1478 aa33.28■■■□□ 2.92
CPNE7-208ENST00000566398 MAGI1Q96QZ7 1491 aaPredicted RBP33.28■■■□□ 2.92
CPNE7-208ENST00000566398 CHD1O14646 1710 aa33.25■■■□□ 2.91
CPNE7-208ENST00000566398 TRIM41Q8WV44 630 aa33.24■■■□□ 2.91
CPNE7-208ENST00000566398 ABCA5Q8WWZ7 1642 aa33.2■■■□□ 2.91
CPNE7-208ENST00000566398 CHMP7Q8WUX9 453 aaPredicted RBP33.19■■■□□ 2.9
CPNE7-208ENST00000566398 SYNJ2O15056 1496 aa33.16■■■□□ 2.9
CPNE7-208ENST00000566398 PBRM1Q86U86 1689 aa33.13■■■□□ 2.89
CPNE7-208ENST00000566398 ARHGEF11O15085 1522 aa33.11■■■□□ 2.89
CPNE7-208ENST00000566398 RIMBP3CA6NJZ7 1639 aa33.1■■■□□ 2.89
CPNE7-208ENST00000566398 RIMBP3BA6NNM3 1639 aa33.1■■■□□ 2.89
CPNE7-208ENST00000566398 RIMBP3Q9UFD9 1639 aa33.1■■■□□ 2.89
CPNE7-208ENST00000566398 CLASP1Q7Z460 1538 aa32.98■■■□□ 2.87
CPNE7-208ENST00000566398 ADAMTS12P58397 1594 aa32.94■■■□□ 2.86
CPNE7-208ENST00000566398 ERICH3Q5RHP9 1530 aa32.93■■■□□ 2.86
CPNE7-208ENST00000566398 FHAD1B1AJZ9 1412 aa32.9■■■□□ 2.86
CPNE7-208ENST00000566398 GRIN2AQ12879 1464 aa32.9■■■□□ 2.86
CPNE7-208ENST00000566398 ARAP1Q96P48 1450 aa32.83■■■□□ 2.85
CPNE7-208ENST00000566398 CYB5RLQ6IPT4 315 aa32.83■■■□□ 2.85
CPNE7-208ENST00000566398 NUP160Q12769 1436 aa32.77■■■□□ 2.84
CPNE7-208ENST00000566398 KIF27Q86VH2 1401 aa32.76■■■□□ 2.83
CPNE7-208ENST00000566398 CEP170Q5SW79 1584 aa32.71■■■□□ 2.83
CPNE7-208ENST00000566398 IGF1RP08069 1367 aa32.64■■■□□ 2.82
CPNE7-208ENST00000566398 CUL7Q14999 1698 aa32.53■■■□□ 2.8
CPNE7-208ENST00000566398 SHROOM2Q13796 1616 aa32.49■■■□□ 2.79
CPNE7-208ENST00000566398 ERCC6L2Q5T890 1561 aa32.48■■■□□ 2.79
CPNE7-208ENST00000566398 RUSC2Q8N2Y8 1516 aa32.46■■■□□ 2.79
CPNE7-208ENST00000566398 CARMIL1Q5VZK9 1371 aa32.45■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms