RNA–Protein interactions for RNA: ENST00000565580.3

TCF4-229, Transcript of transcription factor 4, humanhuman

TSL 4

Gene TCF4, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-229ENST00000565580 AEBP2Q6ZN18 517 aaPredicted RBP20.91■□□□□ 0.94
TCF4-229ENST00000565580 CHIC1Q5VXU3 224 aa19.86■□□□□ 0.77
TCF4-229ENST00000565580 SENP3Q9H4L4 574 aaPredicted RBP18.04■□□□□ 0.48
TCF4-229ENST00000565580 PHF23Q9BUL5 403 aaPredicted RBP17.71■□□□□ 0.43
TCF4-229ENST00000565580 FOXD1Q16676 465 aa16.71■□□□□ 0.27
TCF4-229ENST00000565580 NISCHQ9Y2I1 1504 aa15.92■□□□□ 0.14
TCF4-229ENST00000565580 PLPPR3Q6T4P5 718 aa15.88■□□□□ 0.13
TCF4-229ENST00000565580 MSH5O43196 834 aa15.83■□□□□ 0.12
TCF4-229ENST00000565580 PIAS4Q8N2W9 510 aaPredicted RBP15.64■□□□□ 0.09
TCF4-229ENST00000565580 POTEDQ86YR6 584 aa15.51■□□□□ 0.07
TCF4-229ENST00000565580 PPP6R1Q9UPN7 881 aa15.47■□□□□ 0.07
TCF4-229ENST00000565580 ADRA2BP18089 450 aa15.44■□□□□ 0.06
TCF4-229ENST00000565580 SCAF1Q9H7N4 1312 aaKnown RBP14.35□□□□□ -0.11
TCF4-229ENST00000565580 DMRT2Q9Y5R5 561 aa14.24□□□□□ -0.13
TCF4-229ENST00000565580 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
TCF4-229ENST00000565580 ABCC9O60706 1549 aa14.21□□□□□ -0.13
TCF4-229ENST00000565580 MAPK8IP2Q13387 824 aaPredicted RBP14.18□□□□□ -0.14
TCF4-229ENST00000565580 PPP4R3CPQ6ZMV5 832 aa13.85□□□□□ -0.19
TCF4-229ENST00000565580 HOXD11P31277 338 aaPredicted RBP13.68□□□□□ -0.22
TCF4-229ENST00000565580 CNKSR2Q8WXI2 1034 aa13.68□□□□□ -0.22
TCF4-229ENST00000565580 DCAF8L1A6NGE4 600 aa13.66□□□□□ -0.22
TCF4-229ENST00000565580 CACNB1Q02641 598 aaPredicted RBP13.6□□□□□ -0.23
TCF4-229ENST00000565580 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
TCF4-229ENST00000565580 RB1CC1Q8TDY2 1594 aa13.52□□□□□ -0.25
TCF4-229ENST00000565580 NACADO15069 1562 aa13.44□□□□□ -0.26
TCF4-229ENST00000565580 DCAF8L2P0C7V8 631 aa13.41□□□□□ -0.26
TCF4-229ENST00000565580 NCBP3Q53F19 620 aaKnown RBP13.41□□□□□ -0.26
TCF4-229ENST00000565580 RNF39Q9H2S5 420 aa13.41□□□□□ -0.26
TCF4-229ENST00000565580 DNAJC5BQ9UF47 199 aa13.34□□□□□ -0.27
TCF4-229ENST00000565580 C1QBPQ07021 282 aaKnown RBP13.29□□□□□ -0.28
TCF4-229ENST00000565580 MYO15BQ96JP2 1530 aa13.27□□□□□ -0.29
TCF4-229ENST00000565580 PABPN1Q86U42 306 aaKnown RBP eCLIP13.25□□□□□ -0.29
TCF4-229ENST00000565580 UNC13AQ9UPW8 1703 aa13.23□□□□□ -0.29
TCF4-229ENST00000565580 ZCCHC6Q5VYS8 1495 aaKnown RBP13.21□□□□□ -0.3
TCF4-229ENST00000565580 BICRAQ9NZM4 1560 aa13.16□□□□□ -0.3
TCF4-229ENST00000565580 DCAF1Q9Y4B6 1507 aa13.13□□□□□ -0.31
TCF4-229ENST00000565580 NPM3O75607 178 aaKnown RBP13.06□□□□□ -0.32
TCF4-229ENST00000565580 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.32
TCF4-229ENST00000565580 SCRIBQ14160 1630 aa13□□□□□ -0.33
TCF4-229ENST00000565580 SHROOM4Q9ULL8 1493 aa12.93□□□□□ -0.34
TCF4-229ENST00000565580 CC2D2AQ9P2K1 1620 aa12.82□□□□□ -0.36
TCF4-229ENST00000565580 EIF4G1Q04637 1599 aaKnown RBP12.81□□□□□ -0.36
TCF4-229ENST00000565580 CECR2Q9BXF3 1484 aa12.78□□□□□ -0.36
TCF4-229ENST00000565580 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
TCF4-229ENST00000565580 KCNA4P22459 653 aa12.67□□□□□ -0.38
TCF4-229ENST00000565580 CAPN15O75808 1086 aa12.58□□□□□ -0.4
TCF4-229ENST00000565580 APLP2Q06481 763 aa12.56□□□□□ -0.4
TCF4-229ENST00000565580 SPINK5Q9NQ38 1064 aaPredicted RBP12.51□□□□□ -0.41
TCF4-229ENST00000565580 DSG3P32926 999 aa12.5□□□□□ -0.41
TCF4-229ENST00000565580 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.48□□□□□ -0.41
TCF4-229ENST00000565580 HNRNPUL2Q1KMD3 747 aaKnown RBP12.48□□□□□ -0.41
TCF4-229ENST00000565580 SLC4A2P04920 1241 aa12.46□□□□□ -0.41
TCF4-229ENST00000565580 NCAPD3P42695 1498 aa12.42□□□□□ -0.42
TCF4-229ENST00000565580 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.42
TCF4-229ENST00000565580 ZNF219Q9P2Y4 722 aaPredicted RBP12.4□□□□□ -0.42
TCF4-229ENST00000565580 SMARCA4P51532 1647 aa12.4□□□□□ -0.42
TCF4-229ENST00000565580 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
TCF4-229ENST00000565580 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
TCF4-229ENST00000565580 BAZ1AQ9NRL2 1556 aaPredicted RBP12.34□□□□□ -0.43
TCF4-229ENST00000565580 TRHP20396 242 aaPredicted RBP12.33□□□□□ -0.44
TCF4-229ENST00000565580 HMGXB3Q12766 1538 aa12.32□□□□□ -0.44
TCF4-229ENST00000565580 MROH2BQ7Z745 1585 aa12.29□□□□□ -0.44
TCF4-229ENST00000565580 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.44
TCF4-229ENST00000565580 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.44
TCF4-229ENST00000565580 NESP48681 1621 aa12.24□□□□□ -0.45
TCF4-229ENST00000565580 DNAJC5Q9H3Z4 198 aa12.24□□□□□ -0.45
TCF4-229ENST00000565580 ERCC6Q03468 1493 aa12.23□□□□□ -0.45
TCF4-229ENST00000565580 ABCB7O75027 752 aa12.21□□□□□ -0.45
TCF4-229ENST00000565580 CUX2O14529 1486 aa12.19□□□□□ -0.46
TCF4-229ENST00000565580 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
TCF4-229ENST00000565580 POTEHQ6S545 545 aa12.17□□□□□ -0.46
TCF4-229ENST00000565580 WIZO95785 1651 aa12.13□□□□□ -0.47
TCF4-229ENST00000565580 LAMC3Q9Y6N6 1575 aa12.12□□□□□ -0.47
TCF4-229ENST00000565580 THOC2Q8NI27 1593 aaKnown RBP12.08□□□□□ -0.48
TCF4-229ENST00000565580 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
TCF4-229ENST00000565580 KIF21AQ7Z4S6 1674 aa12.06□□□□□ -0.48
TCF4-229ENST00000565580 CADPSQ9ULU8 1353 aa12.05□□□□□ -0.48
TCF4-229ENST00000565580 RSF1Q96T23 1441 aaPredicted RBP12.05□□□□□ -0.48
TCF4-229ENST00000565580 PDS5BQ9NTI5 1447 aa12.04□□□□□ -0.48
TCF4-229ENST00000565580 SLC4A1APQ9BWU0 796 aaKnown RBP12.01□□□□□ -0.49
TCF4-229ENST00000565580 POLA2Q14181 598 aa11.98□□□□□ -0.49
TCF4-229ENST00000565580 TOP2AP11388 1531 aaKnown RBP11.97□□□□□ -0.49
TCF4-229ENST00000565580 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
TCF4-229ENST00000565580 FOXD4L1Q9NU39 408 aa11.95□□□□□ -0.5
TCF4-229ENST00000565580 CFTRP13569 1480 aa11.93□□□□□ -0.5
TCF4-229ENST00000565580 WDR62O43379 1518 aa11.92□□□□□ -0.5
TCF4-229ENST00000565580 FANCD2Q9BXW9 1451 aa11.91□□□□□ -0.5
TCF4-229ENST00000565580 CEP164Q9UPV0 1460 aa11.91□□□□□ -0.5
TCF4-229ENST00000565580 ZBTB12Q9Y330 459 aaPredicted RBP11.87□□□□□ -0.51
TCF4-229ENST00000565580 CCDC88BA6NC98 1476 aa11.84□□□□□ -0.51
TCF4-229ENST00000565580 URB2Q14146 1524 aaKnown RBP11.83□□□□□ -0.52
TCF4-229ENST00000565580 PRDM2Q13029 1718 aa11.78□□□□□ -0.52
TCF4-229ENST00000565580 CHRDL2Q6WN34 429 aa11.75□□□□□ -0.53
TCF4-229ENST00000565580 ATF5Q9Y2D1 282 aaPredicted RBP11.73□□□□□ -0.53
TCF4-229ENST00000565580 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
TCF4-229ENST00000565580 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
TCF4-229ENST00000565580 TOPBP1Q92547 1522 aa11.7□□□□□ -0.54
TCF4-229ENST00000565580 ZNF608Q9ULD9 1512 aaPredicted RBP11.68□□□□□ -0.54
TCF4-229ENST00000565580 ATXN8OSP0DMR3 200 aa11.67□□□□□ -0.54
TCF4-229ENST00000565580 IFT140Q96RY7 1462 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 167.6 ms