RNA–Protein interactions for RNA: ENST00000563003.1

AC040174.1-201, humanhuman

TSL 1 (best) BASIC

Gene AC040174.1, Length 2,571 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC040174.1-201ENST00000563003 NISCHQ9Y2I1 1504 aa28.52■■■□□ 2.16
AC040174.1-201ENST00000563003 CCDC180Q9P1Z9 1646 aa24.72■■□□□ 1.55
AC040174.1-201ENST00000563003 ZCCHC6Q5VYS8 1495 aaKnown RBP24■■□□□ 1.43
AC040174.1-201ENST00000563003 ABCC9O60706 1549 aa23.65■■□□□ 1.38
AC040174.1-201ENST00000563003 DCAF1Q9Y4B6 1507 aa23.57■■□□□ 1.36
AC040174.1-201ENST00000563003 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
AC040174.1-201ENST00000563003 SHROOM4Q9ULL8 1493 aa23.49■■□□□ 1.35
AC040174.1-201ENST00000563003 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
AC040174.1-201ENST00000563003 HRCP23327 699 aa23.08■■□□□ 1.29
AC040174.1-201ENST00000563003 NACADO15069 1562 aa22.97■■□□□ 1.27
AC040174.1-201ENST00000563003 SCRIBQ14160 1630 aa22.79■■□□□ 1.24
AC040174.1-201ENST00000563003 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
AC040174.1-201ENST00000563003 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
AC040174.1-201ENST00000563003 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.21
AC040174.1-201ENST00000563003 PPARGC1BQ86YN6 1023 aaKnown RBP22.58■■□□□ 1.21
AC040174.1-201ENST00000563003 CHIC1Q5VXU3 224 aa22.37■■□□□ 1.17
AC040174.1-201ENST00000563003 PELP1Q8IZL8 1130 aaKnown RBP22.29■■□□□ 1.16
AC040174.1-201ENST00000563003 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
AC040174.1-201ENST00000563003 RSF1Q96T23 1441 aaPredicted RBP22.24■■□□□ 1.15
AC040174.1-201ENST00000563003 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.13
AC040174.1-201ENST00000563003 PABPN1Q86U42 306 aaKnown RBP eCLIP22.14■■□□□ 1.13
AC040174.1-201ENST00000563003 BICRAQ9NZM4 1560 aa22.08■■□□□ 1.13
AC040174.1-201ENST00000563003 MROH2BQ7Z745 1585 aa22.05■■□□□ 1.12
AC040174.1-201ENST00000563003 BAZ1AQ9NRL2 1556 aaPredicted RBP22■■□□□ 1.11
AC040174.1-201ENST00000563003 WIZO95785 1651 aa21.89■■□□□ 1.09
AC040174.1-201ENST00000563003 TRIM26Q12899 539 aaPredicted RBP21.87■■□□□ 1.09
AC040174.1-201ENST00000563003 SMARCA4P51532 1647 aa21.86■■□□□ 1.09
AC040174.1-201ENST00000563003 LOC105371045A0A1W2PR82 267 aa21.85■■□□□ 1.09
AC040174.1-201ENST00000563003 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
AC040174.1-201ENST00000563003 ZEB1P37275 1124 aaPredicted RBP21.7■■□□□ 1.06
AC040174.1-201ENST00000563003 DNAJC5BQ9UF47 199 aa21.66■■□□□ 1.06
AC040174.1-201ENST00000563003 TOP2AP11388 1531 aaKnown RBP21.66■■□□□ 1.06
AC040174.1-201ENST00000563003 PEG3Q9GZU2 1588 aa21.58■■□□□ 1.04
AC040174.1-201ENST00000563003 SMARCA2P51531 1590 aa21.46■■□□□ 1.03
AC040174.1-201ENST00000563003 EIF4G1Q04637 1599 aaKnown RBP21.46■■□□□ 1.03
AC040174.1-201ENST00000563003 CCDC88BA6NC98 1476 aa21.46■■□□□ 1.03
AC040174.1-201ENST00000563003 ATAD2BQ9ULI0 1458 aa21.43■■□□□ 1.02
AC040174.1-201ENST00000563003 MYT1Q01538 1121 aa21.42■■□□□ 1.02
AC040174.1-201ENST00000563003 TRIM41Q8WV44 630 aa21.39■■□□□ 1.01
AC040174.1-201ENST00000563003 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
AC040174.1-201ENST00000563003 BAZ1BQ9UIG0 1483 aaKnown RBP21.33■■□□□ 1.01
AC040174.1-201ENST00000563003 ACIN1Q9UKV3 1341 aaKnown RBP21.31■■□□□ 1
AC040174.1-201ENST00000563003 NEUROD1Q13562 356 aa21.24■□□□□ 0.99
AC040174.1-201ENST00000563003 NCAPD3P42695 1498 aa21.2■□□□□ 0.98
AC040174.1-201ENST00000563003 HMGXB3Q12766 1538 aa21.18■□□□□ 0.98
AC040174.1-201ENST00000563003 GTF3C3Q9Y5Q9 886 aa21.12■□□□□ 0.97
AC040174.1-201ENST00000563003 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
AC040174.1-201ENST00000563003 CENPBP07199 599 aaPredicted RBP21.01■□□□□ 0.95
AC040174.1-201ENST00000563003 FAM9AQ8IZU1 332 aaPredicted RBP21■□□□□ 0.95
AC040174.1-201ENST00000563003 WRNQ14191 1432 aaPredicted RBP eCLIP20.93■□□□□ 0.94
AC040174.1-201ENST00000563003 DIEXFQ68CQ4 756 aaKnown RBP20.92■□□□□ 0.94
AC040174.1-201ENST00000563003 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.92■□□□□ 0.94
AC040174.1-201ENST00000563003 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
AC040174.1-201ENST00000563003 EHMT2Q96KQ7 1210 aa20.85■□□□□ 0.93
AC040174.1-201ENST00000563003 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
AC040174.1-201ENST00000563003 CFTRP13569 1480 aa20.81■□□□□ 0.92
AC040174.1-201ENST00000563003 EEA1Q15075 1411 aa20.78■□□□□ 0.92
AC040174.1-201ENST00000563003 SOGA1O94964 1423 aa20.76■□□□□ 0.91
AC040174.1-201ENST00000563003 PRDM2Q13029 1718 aa20.73■□□□□ 0.91
AC040174.1-201ENST00000563003 TOP2BQ02880 1626 aa20.72■□□□□ 0.91
AC040174.1-201ENST00000563003 CADPSQ9ULU8 1353 aa20.69■□□□□ 0.9
AC040174.1-201ENST00000563003 BIVM-ERCC5R4GMW8 1640 aa20.69■□□□□ 0.9
AC040174.1-201ENST00000563003 RUSC2Q8N2Y8 1516 aa20.67■□□□□ 0.9
AC040174.1-201ENST00000563003 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
AC040174.1-201ENST00000563003 CUX1P39880 1505 aa20.59■□□□□ 0.89
AC040174.1-201ENST00000563003 YTHDC1Q96MU7 727 aaKnown RBP20.55■□□□□ 0.88
AC040174.1-201ENST00000563003 NESP48681 1621 aa20.53■□□□□ 0.88
AC040174.1-201ENST00000563003 ZNF316A6NFI3 1004 aaPredicted RBP20.52■□□□□ 0.88
AC040174.1-201ENST00000563003 GOLGA3Q08378 1498 aa20.51■□□□□ 0.87
AC040174.1-201ENST00000563003 TNIKQ9UKE5 1360 aa20.51■□□□□ 0.87
AC040174.1-201ENST00000563003 KIF21BO75037 1637 aa20.49■□□□□ 0.87
AC040174.1-201ENST00000563003 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
AC040174.1-201ENST00000563003 FANCD2Q9BXW9 1451 aa20.45■□□□□ 0.86
AC040174.1-201ENST00000563003 UBTFP17480 764 aaKnown RBP20.44■□□□□ 0.86
AC040174.1-201ENST00000563003 LAMC3Q9Y6N6 1575 aa20.43■□□□□ 0.86
AC040174.1-201ENST00000563003 CEP162Q5TB80 1403 aa20.41■□□□□ 0.86
AC040174.1-201ENST00000563003 MIER1Q8N108 512 aa20.4■□□□□ 0.86
AC040174.1-201ENST00000563003 KIF27Q86VH2 1401 aa20.38■□□□□ 0.85
AC040174.1-201ENST00000563003 TTBK1Q5TCY1 1321 aaPredicted RBP20.37■□□□□ 0.85
AC040174.1-201ENST00000563003 FGD5Q6ZNL6 1462 aa20.33■□□□□ 0.84
AC040174.1-201ENST00000563003 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.84
AC040174.1-201ENST00000563003 DNMBPQ6XZF7 1577 aa20.32■□□□□ 0.84
AC040174.1-201ENST00000563003 ERCC6Q03468 1493 aa20.32■□□□□ 0.84
AC040174.1-201ENST00000563003 PRXQ9BXM0 1461 aa20.3■□□□□ 0.84
AC040174.1-201ENST00000563003 ERICH3Q5RHP9 1530 aa20.3■□□□□ 0.84
AC040174.1-201ENST00000563003 PDS5BQ9NTI5 1447 aa20.28■□□□□ 0.84
AC040174.1-201ENST00000563003 TOPBP1Q92547 1522 aa20.26■□□□□ 0.83
AC040174.1-201ENST00000563003 CUX2O14529 1486 aa20.26■□□□□ 0.83
AC040174.1-201ENST00000563003 KIF21AQ7Z4S6 1674 aa20.25■□□□□ 0.83
AC040174.1-201ENST00000563003 CLIP1P30622 1438 aa20.2■□□□□ 0.82
AC040174.1-201ENST00000563003 POLA1P09884 1462 aaPredicted RBP20.18■□□□□ 0.82
AC040174.1-201ENST00000563003 URB2Q14146 1524 aaKnown RBP20.18■□□□□ 0.82
AC040174.1-201ENST00000563003 IGF1RP08069 1367 aa20.17■□□□□ 0.82
AC040174.1-201ENST00000563003 ABCA10Q8WWZ4 1543 aa20.15■□□□□ 0.82
AC040174.1-201ENST00000563003 THOC2Q8NI27 1593 aaKnown RBP20.14■□□□□ 0.81
AC040174.1-201ENST00000563003 RAD54L2Q9Y4B4 1467 aa20.13■□□□□ 0.81
AC040174.1-201ENST00000563003 SUPT16HQ9Y5B9 1047 aaKnown RBP20.11■□□□□ 0.81
AC040174.1-201ENST00000563003 ANP32EQ9BTT0 268 aa20.08■□□□□ 0.81
AC040174.1-201ENST00000563003 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.81
AC040174.1-201ENST00000563003 CLSPNQ9HAW4 1339 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms