RNA–Protein interactions for RNA: ENST00000562373.1

NR4A1-219, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 3

Gene NR4A1, Length 838 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-219ENST00000562373 NISCHQ9Y2I1 1504 aa51.59■■■■■ 5.85
NR4A1-219ENST00000562373 CCDC180Q9P1Z9 1646 aa45.86■■■■■ 4.93
NR4A1-219ENST00000562373 ABCC9O60706 1549 aa45.43■■■■■ 4.86
NR4A1-219ENST00000562373 DCAF8L2P0C7V8 631 aa43.52■■■■■ 4.56
NR4A1-219ENST00000562373 RB1CC1Q8TDY2 1594 aa43.39■■■■■ 4.54
NR4A1-219ENST00000562373 NACADO15069 1562 aa43.24■■■■■ 4.51
NR4A1-219ENST00000562373 ZCCHC6Q5VYS8 1495 aaKnown RBP42.87■■■■■ 4.45
NR4A1-219ENST00000562373 MYO15BQ96JP2 1530 aa42.79■■■■■ 4.44
NR4A1-219ENST00000562373 DCAF1Q9Y4B6 1507 aa42.54■■■■■ 4.4
NR4A1-219ENST00000562373 PABPN1Q86U42 306 aaKnown RBP eCLIP42.52■■■■■ 4.4
NR4A1-219ENST00000562373 UNC13AQ9UPW8 1703 aa42.47■■■■■ 4.39
NR4A1-219ENST00000562373 BICRAQ9NZM4 1560 aa42.17■■■■■ 4.34
NR4A1-219ENST00000562373 DNAJC5BQ9UF47 199 aa42.11■■■■■ 4.33
NR4A1-219ENST00000562373 SCRIBQ14160 1630 aa42.02■■■■■ 4.32
NR4A1-219ENST00000562373 SHROOM4Q9ULL8 1493 aa41.45■■■■■ 4.23
NR4A1-219ENST00000562373 EIF4G1Q04637 1599 aaKnown RBP41.05■■■■■ 4.16
NR4A1-219ENST00000562373 CC2D2AQ9P2K1 1620 aa41■■■■■ 4.15
NR4A1-219ENST00000562373 CECR2Q9BXF3 1484 aa40.78■■■■■ 4.12
NR4A1-219ENST00000562373 SMARCA4P51532 1647 aa40.09■■■■■ 4.01
NR4A1-219ENST00000562373 ATAD2BQ9ULI0 1458 aa39.99■■■■□ 3.99
NR4A1-219ENST00000562373 NCAPD3P42695 1498 aa39.96■■■■□ 3.99
NR4A1-219ENST00000562373 BAZ1AQ9NRL2 1556 aaPredicted RBP39.95■■■■□ 3.99
NR4A1-219ENST00000562373 MROH2BQ7Z745 1585 aa39.84■■■■□ 3.97
NR4A1-219ENST00000562373 SMARCA2P51531 1590 aa39.83■■■■□ 3.97
NR4A1-219ENST00000562373 HMGXB3Q12766 1538 aa39.66■■■■□ 3.94
NR4A1-219ENST00000562373 BAZ1BQ9UIG0 1483 aaKnown RBP39.62■■■■□ 3.93
NR4A1-219ENST00000562373 PEG3Q9GZU2 1588 aa39.61■■■■□ 3.93
NR4A1-219ENST00000562373 WIZO95785 1651 aa39.4■■■■□ 3.9
NR4A1-219ENST00000562373 RSF1Q96T23 1441 aaPredicted RBP39.25■■■■□ 3.87
NR4A1-219ENST00000562373 NESP48681 1621 aa39.25■■■■□ 3.87
NR4A1-219ENST00000562373 ERCC6Q03468 1493 aa39.11■■■■□ 3.85
NR4A1-219ENST00000562373 LAMC3Q9Y6N6 1575 aa38.91■■■■□ 3.82
NR4A1-219ENST00000562373 TOP2AP11388 1531 aaKnown RBP38.85■■■■□ 3.81
NR4A1-219ENST00000562373 CADPSQ9ULU8 1353 aa38.82■■■■□ 3.81
NR4A1-219ENST00000562373 PDS5BQ9NTI5 1447 aa38.71■■■■□ 3.79
NR4A1-219ENST00000562373 CUX2O14529 1486 aa38.7■■■■□ 3.79
NR4A1-219ENST00000562373 KIF21AQ7Z4S6 1674 aa38.68■■■■□ 3.78
NR4A1-219ENST00000562373 THOC2Q8NI27 1593 aaKnown RBP38.57■■■■□ 3.76
NR4A1-219ENST00000562373 CCDC88BA6NC98 1476 aa38.5■■■■□ 3.75
NR4A1-219ENST00000562373 CFTRP13569 1480 aa38.49■■■■□ 3.75
NR4A1-219ENST00000562373 FANCD2Q9BXW9 1451 aa38.39■■■■□ 3.74
NR4A1-219ENST00000562373 MRC2Q9UBG0 1479 aa38.34■■■■□ 3.73
NR4A1-219ENST00000562373 CEP164Q9UPV0 1460 aa38.33■■■■□ 3.73
NR4A1-219ENST00000562373 SUPT5HO00267 1087 aaKnown RBP38.23■■■■□ 3.71
NR4A1-219ENST00000562373 WDR62O43379 1518 aa38.18■■■■□ 3.7
NR4A1-219ENST00000562373 PRDM2Q13029 1718 aa38.08■■■■□ 3.69
NR4A1-219ENST00000562373 URB2Q14146 1524 aaKnown RBP38.05■■■■□ 3.68
NR4A1-219ENST00000562373 DNAJC5Q9H3Z4 198 aa38.03■■■■□ 3.68
NR4A1-219ENST00000562373 TOPBP1Q92547 1522 aa37.73■■■■□ 3.63
NR4A1-219ENST00000562373 DNMBPQ6XZF7 1577 aa37.61■■■■□ 3.61
NR4A1-219ENST00000562373 ABCC8Q09428 1581 aa37.6■■■■□ 3.61
NR4A1-219ENST00000562373 IFT140Q96RY7 1462 aa37.52■■■■□ 3.6
NR4A1-219ENST00000562373 ZNF608Q9ULD9 1512 aaPredicted RBP37.5■■■■□ 3.59
NR4A1-219ENST00000562373 POLA1P09884 1462 aaPredicted RBP37.39■■■■□ 3.58
NR4A1-219ENST00000562373 CUX1P39880 1505 aa37.36■■■■□ 3.57
NR4A1-219ENST00000562373 RAD54L2Q9Y4B4 1467 aa37.34■■■■□ 3.57
NR4A1-219ENST00000562373 TARBP1Q13395 1621 aaKnown RBP37.32■■■■□ 3.56
NR4A1-219ENST00000562373 SOGA1O94964 1423 aa37.28■■■■□ 3.56
NR4A1-219ENST00000562373 AQRO60306 1485 aaKnown RBP eCLIP37.27■■■■□ 3.56
NR4A1-219ENST00000562373 FGD5Q6ZNL6 1462 aa37.27■■■■□ 3.56
NR4A1-219ENST00000562373 EIF4G3O43432 1585 aaKnown RBP37.23■■■■□ 3.55
NR4A1-219ENST00000562373 OSCARQ8IYS5 282 aa37.19■■■■□ 3.54
NR4A1-219ENST00000562373 TDRD9Q8NDG6 1382 aaKnown RBP37.17■■■■□ 3.54
NR4A1-219ENST00000562373 WRNQ14191 1432 aaPredicted RBP eCLIP36.99■■■■□ 3.51
NR4A1-219ENST00000562373 FBLN2P98095 1184 aa36.96■■■■□ 3.51
NR4A1-219ENST00000562373 SYNJ1O43426 1573 aa36.93■■■■□ 3.5
NR4A1-219ENST00000562373 WDR97A6NE52 1622 aa36.89■■■■□ 3.5
NR4A1-219ENST00000562373 TOP2BQ02880 1626 aa36.88■■■■□ 3.5
NR4A1-219ENST00000562373 BIVM-ERCC5R4GMW8 1640 aa36.87■■■■□ 3.49
NR4A1-219ENST00000562373 CHD1O14646 1710 aa36.85■■■■□ 3.49
NR4A1-219ENST00000562373 SNAPC4Q5SXM2 1469 aa36.85■■■■□ 3.49
NR4A1-219ENST00000562373 ABCA10Q8WWZ4 1543 aa36.84■■■■□ 3.49
NR4A1-219ENST00000562373 GRIN2BQ13224 1484 aa36.81■■■■□ 3.48
NR4A1-219ENST00000562373 GAPVD1Q14C86 1478 aa36.81■■■■□ 3.48
NR4A1-219ENST00000562373 TRIM41Q8WV44 630 aa36.79■■■■□ 3.48
NR4A1-219ENST00000562373 CHMP7Q8WUX9 453 aaPredicted RBP36.73■■■■□ 3.47
NR4A1-219ENST00000562373 PBRM1Q86U86 1689 aa36.7■■■■□ 3.47
NR4A1-219ENST00000562373 ABCA5Q8WWZ7 1642 aa36.7■■■■□ 3.47
NR4A1-219ENST00000562373 MAGI1Q96QZ7 1491 aaPredicted RBP36.69■■■■□ 3.46
NR4A1-219ENST00000562373 SYNJ2O15056 1496 aa36.59■■■■□ 3.45
NR4A1-219ENST00000562373 RIMBP3CA6NJZ7 1639 aa36.59■■■■□ 3.45
NR4A1-219ENST00000562373 RIMBP3BA6NNM3 1639 aa36.59■■■■□ 3.45
NR4A1-219ENST00000562373 RIMBP3Q9UFD9 1639 aa36.59■■■■□ 3.45
NR4A1-219ENST00000562373 ARHGEF11O15085 1522 aa36.53■■■■□ 3.44
NR4A1-219ENST00000562373 CLASP1Q7Z460 1538 aa36.4■■■■□ 3.42
NR4A1-219ENST00000562373 ADAMTS12P58397 1594 aa36.38■■■■□ 3.41
NR4A1-219ENST00000562373 CYB5RLQ6IPT4 315 aa36.37■■■■□ 3.41
NR4A1-219ENST00000562373 ERICH3Q5RHP9 1530 aa36.36■■■■□ 3.41
NR4A1-219ENST00000562373 GRIN2AQ12879 1464 aa36.35■■■■□ 3.41
NR4A1-219ENST00000562373 FHAD1B1AJZ9 1412 aa36.34■■■■□ 3.41
NR4A1-219ENST00000562373 ARAP1Q96P48 1450 aa36.24■■■■□ 3.39
NR4A1-219ENST00000562373 KIF27Q86VH2 1401 aa36.22■■■■□ 3.39
NR4A1-219ENST00000562373 CEP170Q5SW79 1584 aa36.21■■■■□ 3.39
NR4A1-219ENST00000562373 IGF1RP08069 1367 aa36.19■■■■□ 3.38
NR4A1-219ENST00000562373 NUP160Q12769 1436 aa36.17■■■■□ 3.38
NR4A1-219ENST00000562373 ERCC6L2Q5T890 1561 aa36.02■■■■□ 3.36
NR4A1-219ENST00000562373 RUSC2Q8N2Y8 1516 aa35.98■■■■□ 3.35
NR4A1-219ENST00000562373 CARMIL1Q5VZK9 1371 aa35.96■■■■□ 3.35
NR4A1-219ENST00000562373 CUL7Q14999 1698 aa35.94■■■■□ 3.34
NR4A1-219ENST00000562373 JPH4Q96JJ6 628 aa35.93■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms