RNA–Protein interactions for RNA: ENST00000560777.5

RABGGTA-218, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5 BASIC

Gene RABGGTA, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-218ENST00000560777 NISCHQ9Y2I1 1504 aa28.73■■■□□ 2.19
RABGGTA-218ENST00000560777 CCDC180Q9P1Z9 1646 aa25.4■■□□□ 1.66
RABGGTA-218ENST00000560777 ABCC9O60706 1549 aa24.79■■□□□ 1.56
RABGGTA-218ENST00000560777 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
RABGGTA-218ENST00000560777 ZCCHC6Q5VYS8 1495 aaKnown RBP23.94■■□□□ 1.42
RABGGTA-218ENST00000560777 NACADO15069 1562 aa23.89■■□□□ 1.41
RABGGTA-218ENST00000560777 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
RABGGTA-218ENST00000560777 MYO15BQ96JP2 1530 aa23.8■■□□□ 1.4
RABGGTA-218ENST00000560777 DCAF1Q9Y4B6 1507 aa23.75■■□□□ 1.39
RABGGTA-218ENST00000560777 UNC13AQ9UPW8 1703 aa23.32■■□□□ 1.32
RABGGTA-218ENST00000560777 PABPN1Q86U42 306 aaKnown RBP eCLIP23.26■■□□□ 1.314e-10■■■□□ 15
RABGGTA-218ENST00000560777 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
RABGGTA-218ENST00000560777 BICRAQ9NZM4 1560 aa23.18■■□□□ 1.3
RABGGTA-218ENST00000560777 SHROOM4Q9ULL8 1493 aa22.88■■□□□ 1.25
RABGGTA-218ENST00000560777 DNAJC5BQ9UF47 199 aa22.73■■□□□ 1.23
RABGGTA-218ENST00000560777 EIF4G1Q04637 1599 aaKnown RBP22.54■■□□□ 1.2
RABGGTA-218ENST00000560777 CC2D2AQ9P2K1 1620 aa22.41■■□□□ 1.18
RABGGTA-218ENST00000560777 CECR2Q9BXF3 1484 aa22.4■■□□□ 1.18
RABGGTA-218ENST00000560777 SMARCA4P51532 1647 aa22.23■■□□□ 1.15
RABGGTA-218ENST00000560777 BAZ1AQ9NRL2 1556 aaPredicted RBP22.22■■□□□ 1.15
RABGGTA-218ENST00000560777 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
RABGGTA-218ENST00000560777 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
RABGGTA-218ENST00000560777 NCAPD3P42695 1498 aa22.09■■□□□ 1.13
RABGGTA-218ENST00000560777 SMARCA2P51531 1590 aa22.04■■□□□ 1.12
RABGGTA-218ENST00000560777 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
RABGGTA-218ENST00000560777 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
RABGGTA-218ENST00000560777 HMGXB3Q12766 1538 aa21.93■■□□□ 1.1
RABGGTA-218ENST00000560777 BAZ1BQ9UIG0 1483 aaKnown RBP21.91■■□□□ 1.1
RABGGTA-218ENST00000560777 WIZO95785 1651 aa21.91■■□□□ 1.1
RABGGTA-218ENST00000560777 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
RABGGTA-218ENST00000560777 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
RABGGTA-218ENST00000560777 NESP48681 1621 aa21.51■■□□□ 1.03
RABGGTA-218ENST00000560777 CCDC88BA6NC98 1476 aa21.46■■□□□ 1.03
RABGGTA-218ENST00000560777 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
RABGGTA-218ENST00000560777 LAMC3Q9Y6N6 1575 aa21.43■■□□□ 1.02
RABGGTA-218ENST00000560777 CFTRP13569 1480 aa21.34■■□□□ 1.01
RABGGTA-218ENST00000560777 ERCC6Q03468 1493 aa21.32■■□□□ 1
RABGGTA-218ENST00000560777 PDS5BQ9NTI5 1447 aa21.31■■□□□ 1
RABGGTA-218ENST00000560777 KIF21AQ7Z4S6 1674 aa21.2■□□□□ 0.98
RABGGTA-218ENST00000560777 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
RABGGTA-218ENST00000560777 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
RABGGTA-218ENST00000560777 PRDM2Q13029 1718 aa21.09■□□□□ 0.97
RABGGTA-218ENST00000560777 THOC2Q8NI27 1593 aaKnown RBP21.09■□□□□ 0.97
RABGGTA-218ENST00000560777 MRC2Q9UBG0 1479 aa21.07■□□□□ 0.96
RABGGTA-218ENST00000560777 CUX2O14529 1486 aa21.04■□□□□ 0.96
RABGGTA-218ENST00000560777 WDR62O43379 1518 aa20.98■□□□□ 0.95
RABGGTA-218ENST00000560777 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
RABGGTA-218ENST00000560777 ABCC8Q09428 1581 aa20.86■□□□□ 0.93
RABGGTA-218ENST00000560777 TOPBP1Q92547 1522 aa20.86■□□□□ 0.93
RABGGTA-218ENST00000560777 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
RABGGTA-218ENST00000560777 CUX1P39880 1505 aa20.76■□□□□ 0.91
RABGGTA-218ENST00000560777 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
RABGGTA-218ENST00000560777 WRNQ14191 1432 aaPredicted RBP eCLIP20.69■□□□□ 0.9
RABGGTA-218ENST00000560777 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
RABGGTA-218ENST00000560777 FGD5Q6ZNL6 1462 aa20.66■□□□□ 0.9
RABGGTA-218ENST00000560777 SOGA1O94964 1423 aa20.64■□□□□ 0.89
RABGGTA-218ENST00000560777 RAD54L2Q9Y4B4 1467 aa20.63■□□□□ 0.89
RABGGTA-218ENST00000560777 TARBP1Q13395 1621 aaKnown RBP20.61■□□□□ 0.89
RABGGTA-218ENST00000560777 SYNJ1O43426 1573 aa20.61■□□□□ 0.89
RABGGTA-218ENST00000560777 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
RABGGTA-218ENST00000560777 TOP2BQ02880 1626 aa20.6■□□□□ 0.89
RABGGTA-218ENST00000560777 BIVM-ERCC5R4GMW8 1640 aa20.58■□□□□ 0.89
RABGGTA-218ENST00000560777 TDRD9Q8NDG6 1382 aaKnown RBP20.53■□□□□ 0.88
RABGGTA-218ENST00000560777 AQRO60306 1485 aaKnown RBP eCLIP20.53■□□□□ 0.884e-7■■■■□ 19.9
RABGGTA-218ENST00000560777 EIF4G3O43432 1585 aaKnown RBP20.47■□□□□ 0.87
RABGGTA-218ENST00000560777 ABCA10Q8WWZ4 1543 aa20.47■□□□□ 0.87
RABGGTA-218ENST00000560777 WDR97A6NE52 1622 aa20.43■□□□□ 0.86
RABGGTA-218ENST00000560777 GAPVD1Q14C86 1478 aa20.38■□□□□ 0.85
RABGGTA-218ENST00000560777 TRIM41Q8WV44 630 aa20.36■□□□□ 0.85
RABGGTA-218ENST00000560777 GRIN2BQ13224 1484 aa20.35■□□□□ 0.85
RABGGTA-218ENST00000560777 ABCA5Q8WWZ7 1642 aa20.34■□□□□ 0.85
RABGGTA-218ENST00000560777 DNAJC5Q9H3Z4 198 aa20.32■□□□□ 0.84
RABGGTA-218ENST00000560777 SNAPC4Q5SXM2 1469 aa20.3■□□□□ 0.84
RABGGTA-218ENST00000560777 OSCARQ8IYS5 282 aa20.29■□□□□ 0.84
RABGGTA-218ENST00000560777 PBRM1Q86U86 1689 aa20.26■□□□□ 0.83
RABGGTA-218ENST00000560777 MAGI1Q96QZ7 1491 aaPredicted RBP20.26■□□□□ 0.83
RABGGTA-218ENST00000560777 FBLN2P98095 1184 aa20.26■□□□□ 0.83
RABGGTA-218ENST00000560777 KIF27Q86VH2 1401 aa20.25■□□□□ 0.83
RABGGTA-218ENST00000560777 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
RABGGTA-218ENST00000560777 CHMP7Q8WUX9 453 aaPredicted RBP20.23■□□□□ 0.83
RABGGTA-218ENST00000560777 ERICH3Q5RHP9 1530 aa20.22■□□□□ 0.83
RABGGTA-218ENST00000560777 IGF1RP08069 1367 aa20.21■□□□□ 0.83
RABGGTA-218ENST00000560777 SYNJ2O15056 1496 aa20.2■□□□□ 0.82
RABGGTA-218ENST00000560777 CHD1O14646 1710 aa20.18■□□□□ 0.82
RABGGTA-218ENST00000560777 FHAD1B1AJZ9 1412 aa20.16■□□□□ 0.82
RABGGTA-218ENST00000560777 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
RABGGTA-218ENST00000560777 ADAMTS12P58397 1594 aa20.12■□□□□ 0.81
RABGGTA-218ENST00000560777 GRIN2AQ12879 1464 aa20.09■□□□□ 0.81
RABGGTA-218ENST00000560777 CARMIL1Q5VZK9 1371 aa20.06■□□□□ 0.8
RABGGTA-218ENST00000560777 CUL7Q14999 1698 aa20.02■□□□□ 0.8
RABGGTA-218ENST00000560777 NUP160Q12769 1436 aa20.01■□□□□ 0.79
RABGGTA-218ENST00000560777 CLASP1Q7Z460 1538 aa19.99■□□□□ 0.79
RABGGTA-218ENST00000560777 CEP170Q5SW79 1584 aa19.97■□□□□ 0.79
RABGGTA-218ENST00000560777 CSRNP3Q8WYN3 585 aa19.97■□□□□ 0.79
RABGGTA-218ENST00000560777 FAM9AQ8IZU1 332 aaPredicted RBP19.94■□□□□ 0.78
RABGGTA-218ENST00000560777 EEA1Q15075 1411 aa19.93■□□□□ 0.78
RABGGTA-218ENST00000560777 RAPGEF2Q9Y4G8 1499 aa19.92■□□□□ 0.78
RABGGTA-218ENST00000560777 PRXQ9BXM0 1461 aa19.91■□□□□ 0.78
RABGGTA-218ENST00000560777 ARHGEF11O15085 1522 aa19.88■□□□□ 0.77
RABGGTA-218ENST00000560777 JPH4Q96JJ6 628 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms