RNA–Protein interactions for RNA: ENST00000560721.6

ZEB1-219, Transcript of zinc finger E-box binding homeobox 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene ZEB1, Length 3,368 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-219ENST00000560721 NISCHQ9Y2I1 1504 aa13.78□□□□□ -0.2
ZEB1-219ENST00000560721 CCDC180Q9P1Z9 1646 aa12.76□□□□□ -0.37
ZEB1-219ENST00000560721 MYO15BQ96JP2 1530 aa12.12□□□□□ -0.47
ZEB1-219ENST00000560721 DCAF1Q9Y4B6 1507 aa12.04□□□□□ -0.48
ZEB1-219ENST00000560721 SHROOM4Q9ULL8 1493 aa11.66□□□□□ -0.54
ZEB1-219ENST00000560721 ZCCHC6Q5VYS8 1495 aaKnown RBP11.66□□□□□ -0.54
ZEB1-219ENST00000560721 NACADO15069 1562 aa11.65□□□□□ -0.54
ZEB1-219ENST00000560721 RB1CC1Q8TDY2 1594 aa11.44□□□□□ -0.58
ZEB1-219ENST00000560721 UNC13AQ9UPW8 1703 aa11.29□□□□□ -0.6
ZEB1-219ENST00000560721 BICRAQ9NZM4 1560 aa11.06□□□□□ -0.64
ZEB1-219ENST00000560721 PEG3Q9GZU2 1588 aa11.03□□□□□ -0.64
ZEB1-219ENST00000560721 ABCC9O60706 1549 aa10.92□□□□□ -0.66
ZEB1-219ENST00000560721 SMARCA2P51531 1590 aa10.88□□□□□ -0.67
ZEB1-219ENST00000560721 HMGXB3Q12766 1538 aa10.76□□□□□ -0.69
ZEB1-219ENST00000560721 BAZ1AQ9NRL2 1556 aaPredicted RBP10.74□□□□□ -0.69
ZEB1-219ENST00000560721 PRDM2Q13029 1718 aa10.71□□□□□ -0.69
ZEB1-219ENST00000560721 SMARCA4P51532 1647 aa10.7□□□□□ -0.7
ZEB1-219ENST00000560721 SCRIBQ14160 1630 aa10.69□□□□□ -0.7
ZEB1-219ENST00000560721 EIF4G1Q04637 1599 aaKnown RBP10.6□□□□□ -0.71
ZEB1-219ENST00000560721 NCAPD3P42695 1498 aa10.58□□□□□ -0.72
ZEB1-219ENST00000560721 TOP2AP11388 1531 aaKnown RBP10.52□□□□□ -0.73
ZEB1-219ENST00000560721 WDR97A6NE52 1622 aa10.45□□□□□ -0.74
ZEB1-219ENST00000560721 CC2D2AQ9P2K1 1620 aa10.41□□□□□ -0.74
ZEB1-219ENST00000560721 ATAD2BQ9ULI0 1458 aa10.4□□□□□ -0.74
ZEB1-219ENST00000560721 LAMC3Q9Y6N6 1575 aa10.36□□□□□ -0.75
ZEB1-219ENST00000560721 MROH2BQ7Z745 1585 aa10.36□□□□□ -0.75
ZEB1-219ENST00000560721 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
ZEB1-219ENST00000560721 WIZO95785 1651 aa10.27□□□□□ -0.77
ZEB1-219ENST00000560721 CECR2Q9BXF3 1484 aa10.24□□□□□ -0.77
ZEB1-219ENST00000560721 BAZ1BQ9UIG0 1483 aaKnown RBP10.23□□□□□ -0.77
ZEB1-219ENST00000560721 BIVM-ERCC5R4GMW8 1640 aa10.21□□□□□ -0.77
ZEB1-219ENST00000560721 CFTRP13569 1480 aa10.19□□□□□ -0.78
ZEB1-219ENST00000560721 ABCC8Q09428 1581 aa10.16□□□□□ -0.78
ZEB1-219ENST00000560721 THOC2Q8NI27 1593 aaKnown RBP10.11□□□□□ -0.79
ZEB1-219ENST00000560721 WDR62O43379 1518 aa10.1□□□□□ -0.79
ZEB1-219ENST00000560721 CCDC88BA6NC98 1476 aa10.04□□□□□ -0.8
ZEB1-219ENST00000560721 TOP2BQ02880 1626 aa10.03□□□□□ -0.8
ZEB1-219ENST00000560721 DNMBPQ6XZF7 1577 aa10.03□□□□□ -0.8
ZEB1-219ENST00000560721 CUX2O14529 1486 aa10.01□□□□□ -0.81
ZEB1-219ENST00000560721 KIF21AQ7Z4S6 1674 aa9.98□□□□□ -0.81
ZEB1-219ENST00000560721 CADPSQ9ULU8 1353 aa9.97□□□□□ -0.81
ZEB1-219ENST00000560721 TARBP1Q13395 1621 aaKnown RBP9.93□□□□□ -0.82
ZEB1-219ENST00000560721 PDS5BQ9NTI5 1447 aa9.92□□□□□ -0.82
ZEB1-219ENST00000560721 ABCA5Q8WWZ7 1642 aa9.92□□□□□ -0.82
ZEB1-219ENST00000560721 MRC2Q9UBG0 1479 aa9.9□□□□□ -0.82
ZEB1-219ENST00000560721 CUL7Q14999 1698 aa9.88□□□□□ -0.83
ZEB1-219ENST00000560721 EEA1Q15075 1411 aa9.84□□□□□ -0.83
ZEB1-219ENST00000560721 CEP164Q9UPV0 1460 aa9.84□□□□□ -0.83
ZEB1-219ENST00000560721 ABCA10Q8WWZ4 1543 aa9.84□□□□□ -0.83
ZEB1-219ENST00000560721 ERICH3Q5RHP9 1530 aa9.83□□□□□ -0.84
ZEB1-219ENST00000560721 PABPN1Q86U42 306 aaKnown RBP eCLIP9.81□□□□□ -0.84
ZEB1-219ENST00000560721 PBRM1Q86U86 1689 aa9.81□□□□□ -0.84
ZEB1-219ENST00000560721 FANCD2Q9BXW9 1451 aa9.81□□□□□ -0.84
ZEB1-219ENST00000560721 IFT140Q96RY7 1462 aa9.8□□□□□ -0.84
ZEB1-219ENST00000560721 CUX1P39880 1505 aa9.79□□□□□ -0.84
ZEB1-219ENST00000560721 TOPBP1Q92547 1522 aa9.79□□□□□ -0.84
ZEB1-219ENST00000560721 KIF21BO75037 1637 aa9.78□□□□□ -0.84
ZEB1-219ENST00000560721 URB2Q14146 1524 aaKnown RBP9.77□□□□□ -0.85
ZEB1-219ENST00000560721 SYNJ1O43426 1573 aa9.75□□□□□ -0.85
ZEB1-219ENST00000560721 DCAF8L2P0C7V8 631 aa9.74□□□□□ -0.85
ZEB1-219ENST00000560721 SHROOM2Q13796 1616 aa9.73□□□□□ -0.85
ZEB1-219ENST00000560721 ADAMTS12P58397 1594 aa9.69□□□□□ -0.86
ZEB1-219ENST00000560721 MAGI1Q96QZ7 1491 aaPredicted RBP9.69□□□□□ -0.86
ZEB1-219ENST00000560721 NESP48681 1621 aa9.67□□□□□ -0.86
ZEB1-219ENST00000560721 CTTNBP2Q8WZ74 1663 aa9.67□□□□□ -0.86
ZEB1-219ENST00000560721 EIF4G3O43432 1585 aaKnown RBP9.66□□□□□ -0.86
ZEB1-219ENST00000560721 WRNQ14191 1432 aaPredicted RBP eCLIP9.65□□□□□ -0.86
ZEB1-219ENST00000560721 POLA1P09884 1462 aaPredicted RBP9.65□□□□□ -0.86
ZEB1-219ENST00000560721 CLASP1Q7Z460 1538 aa9.62□□□□□ -0.87
ZEB1-219ENST00000560721 DNAJC5BQ9UF47 199 aa9.6□□□□□ -0.87
ZEB1-219ENST00000560721 FGD5Q6ZNL6 1462 aa9.59□□□□□ -0.87
ZEB1-219ENST00000560721 PRXQ9BXM0 1461 aa9.58□□□□□ -0.88
ZEB1-219ENST00000560721 SAMD9Q5K651 1589 aa9.57□□□□□ -0.88
ZEB1-219ENST00000560721 GRIN2BQ13224 1484 aa9.56□□□□□ -0.88
ZEB1-219ENST00000560721 EFCAB5A4FU69 1503 aa9.56□□□□□ -0.88
ZEB1-219ENST00000560721 RUSC2Q8N2Y8 1516 aa9.55□□□□□ -0.88
ZEB1-219ENST00000560721 NUP160Q12769 1436 aa9.54□□□□□ -0.88
ZEB1-219ENST00000560721 UGGT2Q9NYU1 1516 aa9.54□□□□□ -0.88
ZEB1-219ENST00000560721 SYNJ2O15056 1496 aa9.51□□□□□ -0.89
ZEB1-219ENST00000560721 MAP3K1Q13233 1512 aa9.51□□□□□ -0.89
ZEB1-219ENST00000560721 FHAD1B1AJZ9 1412 aa9.5□□□□□ -0.89
ZEB1-219ENST00000560721 CHD1O14646 1710 aa9.5□□□□□ -0.89
ZEB1-219ENST00000560721 KIF27Q86VH2 1401 aa9.48□□□□□ -0.89
ZEB1-219ENST00000560721 AQRO60306 1485 aaKnown RBP eCLIP9.47□□□□□ -0.89
ZEB1-219ENST00000560721 ERCC6Q03468 1493 aa9.47□□□□□ -0.89
ZEB1-219ENST00000560721 GAPVD1Q14C86 1478 aa9.46□□□□□ -0.9
ZEB1-219ENST00000560721 SOGA1O94964 1423 aa9.44□□□□□ -0.9
ZEB1-219ENST00000560721 UHRF1BP1LA0JNW5 1464 aa9.43□□□□□ -0.9
ZEB1-219ENST00000560721 ADCY10Q96PN6 1610 aa9.42□□□□□ -0.9
ZEB1-219ENST00000560721 GRIN2AQ12879 1464 aa9.41□□□□□ -0.9
ZEB1-219ENST00000560721 CEP170Q5SW79 1584 aa9.4□□□□□ -0.9
ZEB1-219ENST00000560721 KIAA0586Q9BVV6 1533 aa9.4□□□□□ -0.9
ZEB1-219ENST00000560721 RAPGEF2Q9Y4G8 1499 aa9.4□□□□□ -0.9
ZEB1-219ENST00000560721 IQGAP2Q13576 1575 aa9.39□□□□□ -0.91
ZEB1-219ENST00000560721 CFAP43Q8NDM7 1665 aa9.38□□□□□ -0.91
ZEB1-219ENST00000560721 KDM5BQ9UGL1 1544 aa9.36□□□□□ -0.91
ZEB1-219ENST00000560721 GOLGA3Q08378 1498 aa9.36□□□□□ -0.91
ZEB1-219ENST00000560721 KIAA0556O60303 1618 aa9.36□□□□□ -0.91
ZEB1-219ENST00000560721 IGF1RP08069 1367 aa9.36□□□□□ -0.91
ZEB1-219ENST00000560721 ARAP3Q8WWN8 1544 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms