RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
SHMT2-234ENST00000557703 CCDC180Q9P1Z9 1646 aa29.08■■■□□ 2.25
SHMT2-234ENST00000557703 ABCC9O60706 1549 aa28.11■■■□□ 2.09
SHMT2-234ENST00000557703 MYO15BQ96JP2 1530 aa27.35■■□□□ 1.97
SHMT2-234ENST00000557703 NACADO15069 1562 aa27.35■■□□□ 1.97
SHMT2-234ENST00000557703 ZCCHC6Q5VYS8 1495 aaKnown RBP27.33■■□□□ 1.97
SHMT2-234ENST00000557703 RB1CC1Q8TDY2 1594 aa27.28■■□□□ 1.96
SHMT2-234ENST00000557703 DCAF1Q9Y4B6 1507 aa27.26■■□□□ 1.95
SHMT2-234ENST00000557703 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
SHMT2-234ENST00000557703 UNC13AQ9UPW8 1703 aa26.49■■□□□ 1.83
SHMT2-234ENST00000557703 SCRIBQ14160 1630 aa26.38■■□□□ 1.81
SHMT2-234ENST00000557703 SHROOM4Q9ULL8 1493 aa26.34■■□□□ 1.81
SHMT2-234ENST00000557703 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
SHMT2-234ENST00000557703 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
SHMT2-234ENST00000557703 EIF4G1Q04637 1599 aaKnown RBP25.67■■□□□ 1.7
SHMT2-234ENST00000557703 DNAJC5BQ9UF47 199 aa25.6■■□□□ 1.69
SHMT2-234ENST00000557703 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
SHMT2-234ENST00000557703 BAZ1AQ9NRL2 1556 aaPredicted RBP25.43■■□□□ 1.66
SHMT2-234ENST00000557703 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
SHMT2-234ENST00000557703 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
SHMT2-234ENST00000557703 SMARCA2P51531 1590 aa25.24■■□□□ 1.63
SHMT2-234ENST00000557703 NCAPD3P42695 1498 aa25.23■■□□□ 1.63
SHMT2-234ENST00000557703 PEG3Q9GZU2 1588 aa25.2■■□□□ 1.62
SHMT2-234ENST00000557703 ATAD2BQ9ULI0 1458 aa25.2■■□□□ 1.62
SHMT2-234ENST00000557703 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
SHMT2-234ENST00000557703 HMGXB3Q12766 1538 aa25.1■■□□□ 1.61
SHMT2-234ENST00000557703 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
SHMT2-234ENST00000557703 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
SHMT2-234ENST00000557703 WIZO95785 1651 aa24.88■■□□□ 1.57
SHMT2-234ENST00000557703 TOP2AP11388 1531 aaKnown RBP24.73■■□□□ 1.55
SHMT2-234ENST00000557703 LAMC3Q9Y6N6 1575 aa24.5■■□□□ 1.51
SHMT2-234ENST00000557703 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
SHMT2-234ENST00000557703 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
SHMT2-234ENST00000557703 CCDC88BA6NC98 1476 aa24.42■■□□□ 1.5
SHMT2-234ENST00000557703 PDS5BQ9NTI5 1447 aa24.38■■□□□ 1.49
SHMT2-234ENST00000557703 CFTRP13569 1480 aa24.38■■□□□ 1.49
SHMT2-234ENST00000557703 NESP48681 1621 aa24.35■■□□□ 1.49
SHMT2-234ENST00000557703 ERCC6Q03468 1493 aa24.3■■□□□ 1.48
SHMT2-234ENST00000557703 FANCD2Q9BXW9 1451 aa24.14■■□□□ 1.46
SHMT2-234ENST00000557703 PRDM2Q13029 1718 aa24.13■■□□□ 1.45
SHMT2-234ENST00000557703 CEP164Q9UPV0 1460 aa24.11■■□□□ 1.45
SHMT2-234ENST00000557703 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.44
SHMT2-234ENST00000557703 CUX2O14529 1486 aa24.07■■□□□ 1.44
SHMT2-234ENST00000557703 MRC2Q9UBG0 1479 aa24.03■■□□□ 1.44
SHMT2-234ENST00000557703 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
SHMT2-234ENST00000557703 ABCC8Q09428 1581 aa23.95■■□□□ 1.42
SHMT2-234ENST00000557703 WDR62O43379 1518 aa23.94■■□□□ 1.42
SHMT2-234ENST00000557703 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
SHMT2-234ENST00000557703 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
SHMT2-234ENST00000557703 TOPBP1Q92547 1522 aa23.77■■□□□ 1.4
SHMT2-234ENST00000557703 IFT140Q96RY7 1462 aa23.64■■□□□ 1.38
SHMT2-234ENST00000557703 WRNQ14191 1432 aaPredicted RBP eCLIP23.62■■□□□ 1.37
SHMT2-234ENST00000557703 CUX1P39880 1505 aa23.61■■□□□ 1.37
SHMT2-234ENST00000557703 POLA1P09884 1462 aaPredicted RBP23.57■■□□□ 1.36
SHMT2-234ENST00000557703 TOP2BQ02880 1626 aa23.53■■□□□ 1.36
SHMT2-234ENST00000557703 SOGA1O94964 1423 aa23.52■■□□□ 1.36
SHMT2-234ENST00000557703 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
SHMT2-234ENST00000557703 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
SHMT2-234ENST00000557703 WDR97A6NE52 1622 aa23.47■■□□□ 1.35
SHMT2-234ENST00000557703 TARBP1Q13395 1621 aaKnown RBP23.47■■□□□ 1.35
SHMT2-234ENST00000557703 SYNJ1O43426 1573 aa23.43■■□□□ 1.34
SHMT2-234ENST00000557703 RAD54L2Q9Y4B4 1467 aa23.4■■□□□ 1.34
SHMT2-234ENST00000557703 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
SHMT2-234ENST00000557703 ZNF608Q9ULD9 1512 aaPredicted RBP23.37■■□□□ 1.33
SHMT2-234ENST00000557703 TDRD9Q8NDG6 1382 aaKnown RBP23.3■■□□□ 1.32
SHMT2-234ENST00000557703 EIF4G3O43432 1585 aaKnown RBP23.3■■□□□ 1.32
SHMT2-234ENST00000557703 AQRO60306 1485 aaKnown RBP eCLIP23.3■■□□□ 1.326e-8■■■■□ 22.1
SHMT2-234ENST00000557703 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
SHMT2-234ENST00000557703 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
SHMT2-234ENST00000557703 DNAJC5Q9H3Z4 198 aa23.22■■□□□ 1.31
SHMT2-234ENST00000557703 TRIM41Q8WV44 630 aa23.21■■□□□ 1.31
SHMT2-234ENST00000557703 ABCA5Q8WWZ7 1642 aa23.2■■□□□ 1.3
SHMT2-234ENST00000557703 MAGI1Q96QZ7 1491 aaPredicted RBP23.18■■□□□ 1.3
SHMT2-234ENST00000557703 KIF27Q86VH2 1401 aa23.16■■□□□ 1.3
SHMT2-234ENST00000557703 ERICH3Q5RHP9 1530 aa23.14■■□□□ 1.3
SHMT2-234ENST00000557703 OSCARQ8IYS5 282 aa23.12■■□□□ 1.29
SHMT2-234ENST00000557703 SNAPC4Q5SXM2 1469 aa23.09■■□□□ 1.29
SHMT2-234ENST00000557703 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
SHMT2-234ENST00000557703 SYNJ2O15056 1496 aa23.07■■□□□ 1.28
SHMT2-234ENST00000557703 CHMP7Q8WUX9 453 aaPredicted RBP23.06■■□□□ 1.28
SHMT2-234ENST00000557703 FHAD1B1AJZ9 1412 aa23.03■■□□□ 1.28
SHMT2-234ENST00000557703 CHIC1Q5VXU3 224 aa23.02■■□□□ 1.28
SHMT2-234ENST00000557703 IGF1RP08069 1367 aa23.01■■□□□ 1.27
SHMT2-234ENST00000557703 FBLN2P98095 1184 aa22.99■■□□□ 1.27
SHMT2-234ENST00000557703 ADAMTS12P58397 1594 aa22.95■■□□□ 1.26
SHMT2-234ENST00000557703 CHD1O14646 1710 aa22.94■■□□□ 1.26
SHMT2-234ENST00000557703 CUL7Q14999 1698 aa22.93■■□□□ 1.26
SHMT2-234ENST00000557703 EEA1Q15075 1411 aa22.93■■□□□ 1.26
SHMT2-234ENST00000557703 GRIN2AQ12879 1464 aa22.91■■□□□ 1.26
SHMT2-234ENST00000557703 CARMIL1Q5VZK9 1371 aa22.89■■□□□ 1.25
SHMT2-234ENST00000557703 NUP160Q12769 1436 aa22.83■■□□□ 1.25
SHMT2-234ENST00000557703 RUSC2Q8N2Y8 1516 aa22.8■■□□□ 1.24
SHMT2-234ENST00000557703 CSRNP3Q8WYN3 585 aa22.79■■□□□ 1.24
SHMT2-234ENST00000557703 CLASP1Q7Z460 1538 aa22.77■■□□□ 1.24
SHMT2-234ENST00000557703 RAPGEF2Q9Y4G8 1499 aa22.77■■□□□ 1.24
SHMT2-234ENST00000557703 PRXQ9BXM0 1461 aa22.73■■□□□ 1.23
SHMT2-234ENST00000557703 CEP170Q5SW79 1584 aa22.71■■□□□ 1.23
SHMT2-234ENST00000557703 KIAA0586Q9BVV6 1533 aa22.69■■□□□ 1.22
SHMT2-234ENST00000557703 JPH4Q96JJ6 628 aa22.63■■□□□ 1.21
SHMT2-234ENST00000557703 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 454.3 ms