RNA–Protein interactions for RNA: ENST00000556162.5

SNX6-206, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-206ENST00000556162 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
SNX6-206ENST00000556162 CCDC180Q9P1Z9 1646 aa29.73■■■□□ 2.35
SNX6-206ENST00000556162 ABCC9O60706 1549 aa28.89■■■□□ 2.21
SNX6-206ENST00000556162 DCAF8L2P0C7V8 631 aa28.15■■■□□ 2.1
SNX6-206ENST00000556162 ZCCHC6Q5VYS8 1495 aaKnown RBP28.08■■■□□ 2.09
SNX6-206ENST00000556162 NACADO15069 1562 aa27.94■■■□□ 2.06
SNX6-206ENST00000556162 RB1CC1Q8TDY2 1594 aa27.89■■■□□ 2.06
SNX6-206ENST00000556162 MYO15BQ96JP2 1530 aa27.86■■■□□ 2.05
SNX6-206ENST00000556162 DCAF1Q9Y4B6 1507 aa27.85■■■□□ 2.05
SNX6-206ENST00000556162 SCRIBQ14160 1630 aa27.19■■□□□ 1.94
SNX6-206ENST00000556162 UNC13AQ9UPW8 1703 aa27.19■■□□□ 1.94
SNX6-206ENST00000556162 PABPN1Q86U42 306 aaKnown RBP eCLIP27.1■■□□□ 1.93
SNX6-206ENST00000556162 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
SNX6-206ENST00000556162 SHROOM4Q9ULL8 1493 aa26.83■■□□□ 1.89
SNX6-206ENST00000556162 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
SNX6-206ENST00000556162 DNAJC5BQ9UF47 199 aa26.26■■□□□ 1.79
SNX6-206ENST00000556162 CECR2Q9BXF3 1484 aa26.2■■□□□ 1.78
SNX6-206ENST00000556162 CC2D2AQ9P2K1 1620 aa26.11■■□□□ 1.77
SNX6-206ENST00000556162 BAZ1AQ9NRL2 1556 aaPredicted RBP26.07■■□□□ 1.76
SNX6-206ENST00000556162 SMARCA4P51532 1647 aa26.03■■□□□ 1.76
SNX6-206ENST00000556162 MROH2BQ7Z745 1585 aa25.94■■□□□ 1.74
SNX6-206ENST00000556162 ATAD2BQ9ULI0 1458 aa25.85■■□□□ 1.73
SNX6-206ENST00000556162 SMARCA2P51531 1590 aa25.82■■□□□ 1.72
SNX6-206ENST00000556162 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
SNX6-206ENST00000556162 RSF1Q96T23 1441 aaPredicted RBP25.78■■□□□ 1.72
SNX6-206ENST00000556162 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
SNX6-206ENST00000556162 WIZO95785 1651 aa25.66■■□□□ 1.7
SNX6-206ENST00000556162 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
SNX6-206ENST00000556162 HMGXB3Q12766 1538 aa25.66■■□□□ 1.7
SNX6-206ENST00000556162 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.67
SNX6-206ENST00000556162 TOP2AP11388 1531 aaKnown RBP25.42■■□□□ 1.66
SNX6-206ENST00000556162 CCDC88BA6NC98 1476 aa25.15■■□□□ 1.62
SNX6-206ENST00000556162 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.61
SNX6-206ENST00000556162 NESP48681 1621 aa25.07■■□□□ 1.6
SNX6-206ENST00000556162 LAMC3Q9Y6N6 1575 aa25.04■■□□□ 1.6
SNX6-206ENST00000556162 CFTRP13569 1480 aa24.97■■□□□ 1.59
SNX6-206ENST00000556162 PDS5BQ9NTI5 1447 aa24.92■■□□□ 1.58
SNX6-206ENST00000556162 ERCC6Q03468 1493 aa24.89■■□□□ 1.58
SNX6-206ENST00000556162 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
SNX6-206ENST00000556162 KIF21AQ7Z4S6 1674 aa24.73■■□□□ 1.55
SNX6-206ENST00000556162 PRDM2Q13029 1718 aa24.71■■□□□ 1.55
SNX6-206ENST00000556162 CEP164Q9UPV0 1460 aa24.71■■□□□ 1.55
SNX6-206ENST00000556162 MRC2Q9UBG0 1479 aa24.61■■□□□ 1.53
SNX6-206ENST00000556162 THOC2Q8NI27 1593 aaKnown RBP24.57■■□□□ 1.52
SNX6-206ENST00000556162 WDR62O43379 1518 aa24.49■■□□□ 1.51
SNX6-206ENST00000556162 CUX2O14529 1486 aa24.48■■□□□ 1.51
SNX6-206ENST00000556162 URB2Q14146 1524 aaKnown RBP24.48■■□□□ 1.51
SNX6-206ENST00000556162 ABCC8Q09428 1581 aa24.45■■□□□ 1.5
SNX6-206ENST00000556162 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
SNX6-206ENST00000556162 DNMBPQ6XZF7 1577 aa24.38■■□□□ 1.49
SNX6-206ENST00000556162 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.48
SNX6-206ENST00000556162 CUX1P39880 1505 aa24.32■■□□□ 1.48
SNX6-206ENST00000556162 POLA1P09884 1462 aaPredicted RBP24.22■■□□□ 1.47
SNX6-206ENST00000556162 FGD5Q6ZNL6 1462 aa24.21■■□□□ 1.47
SNX6-206ENST00000556162 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
SNX6-206ENST00000556162 SYNJ1O43426 1573 aa24.18■■□□□ 1.46
SNX6-206ENST00000556162 TOP2BQ02880 1626 aa24.18■■□□□ 1.46
SNX6-206ENST00000556162 SOGA1O94964 1423 aa24.17■■□□□ 1.46
SNX6-206ENST00000556162 BIVM-ERCC5R4GMW8 1640 aa24.15■■□□□ 1.46
SNX6-206ENST00000556162 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
SNX6-206ENST00000556162 TARBP1Q13395 1621 aaKnown RBP24.08■■□□□ 1.45
SNX6-206ENST00000556162 ZNF608Q9ULD9 1512 aaPredicted RBP24.04■■□□□ 1.44
SNX6-206ENST00000556162 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
SNX6-206ENST00000556162 TDRD9Q8NDG6 1382 aaKnown RBP23.99■■□□□ 1.43
SNX6-206ENST00000556162 ABCA10Q8WWZ4 1543 aa23.98■■□□□ 1.43
SNX6-206ENST00000556162 AQRO60306 1485 aaKnown RBP eCLIP23.98■■□□□ 1.431e-6■■■■■ 27.8
SNX6-206ENST00000556162 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
SNX6-206ENST00000556162 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
SNX6-206ENST00000556162 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
SNX6-206ENST00000556162 GAPVD1Q14C86 1478 aa23.87■■□□□ 1.41
SNX6-206ENST00000556162 GRIN2BQ13224 1484 aa23.82■■□□□ 1.4
SNX6-206ENST00000556162 ABCA5Q8WWZ7 1642 aa23.82■■□□□ 1.4
SNX6-206ENST00000556162 KIF27Q86VH2 1401 aa23.8■■□□□ 1.4
SNX6-206ENST00000556162 SNAPC4Q5SXM2 1469 aa23.73■■□□□ 1.39
SNX6-206ENST00000556162 PBRM1Q86U86 1689 aa23.72■■□□□ 1.39
SNX6-206ENST00000556162 MAGI1Q96QZ7 1491 aaPredicted RBP23.71■■□□□ 1.39
SNX6-206ENST00000556162 FBLN2P98095 1184 aa23.7■■□□□ 1.38
SNX6-206ENST00000556162 ERICH3Q5RHP9 1530 aa23.7■■□□□ 1.38
SNX6-206ENST00000556162 CHMP7Q8WUX9 453 aaPredicted RBP23.67■■□□□ 1.38
SNX6-206ENST00000556162 IGF1RP08069 1367 aa23.67■■□□□ 1.38
SNX6-206ENST00000556162 RUSC2Q8N2Y8 1516 aa23.65■■□□□ 1.38
SNX6-206ENST00000556162 SYNJ2O15056 1496 aa23.62■■□□□ 1.37
SNX6-206ENST00000556162 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
SNX6-206ENST00000556162 FHAD1B1AJZ9 1412 aa23.61■■□□□ 1.37
SNX6-206ENST00000556162 ADAMTS12P58397 1594 aa23.57■■□□□ 1.36
SNX6-206ENST00000556162 CHD1O14646 1710 aa23.54■■□□□ 1.36
SNX6-206ENST00000556162 EEA1Q15075 1411 aa23.54■■□□□ 1.36
SNX6-206ENST00000556162 CARMIL1Q5VZK9 1371 aa23.54■■□□□ 1.36
SNX6-206ENST00000556162 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
SNX6-206ENST00000556162 CUL7Q14999 1698 aa23.52■■□□□ 1.36
SNX6-206ENST00000556162 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
SNX6-206ENST00000556162 GRIN2AQ12879 1464 aa23.5■■□□□ 1.35
SNX6-206ENST00000556162 DNAJC5Q9H3Z4 198 aa23.44■■□□□ 1.34
SNX6-206ENST00000556162 RAPGEF2Q9Y4G8 1499 aa23.41■■□□□ 1.34
SNX6-206ENST00000556162 PRXQ9BXM0 1461 aa23.39■■□□□ 1.33
SNX6-206ENST00000556162 NUP160Q12769 1436 aa23.38■■□□□ 1.33
SNX6-206ENST00000556162 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
SNX6-206ENST00000556162 CLASP1Q7Z460 1538 aa23.32■■□□□ 1.32
SNX6-206ENST00000556162 KIAA0586Q9BVV6 1533 aa23.25■■□□□ 1.31
SNX6-206ENST00000556162 JPH4Q96JJ6 628 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms