RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 MUC12Q9UKN1 5478 aa4.01□□□□□ -1.77
SRP54-208ENST00000555557 KRTAP6-3Q3LI67 103 aa4□□□□□ -1.77
SRP54-208ENST00000555557 NEBP20929 6669 aa3.97□□□□□ -1.77
SRP54-208ENST00000555557 LCE3AQ5TA76 89 aa3.95□□□□□ -1.78
SRP54-208ENST00000555557 KRTAP19-4Q3LI73 84 aa3.93□□□□□ -1.78
SRP54-208ENST00000555557 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
SRP54-208ENST00000555557 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
SRP54-208ENST00000555557 MDN1Q9NU22 5596 aa3.87□□□□□ -1.79
SRP54-208ENST00000555557 KRTAP8-1Q8IUC2 63 aa3.86□□□□□ -1.79
SRP54-208ENST00000555557 KRTAP23-1A1A580 65 aa3.85□□□□□ -1.79
SRP54-208ENST00000555557 SPRR5A0A1B0GTR4 108 aa3.83□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP19-5Q3LI72 72 aa3.83□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP4-2Q9BYR5 136 aa3.82□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP5-9P26371 169 aa3.8□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP19-7Q3SYF9 63 aa3.8□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP4-11Q9BYQ6 195 aa3.78□□□□□ -1.8
SRP54-208ENST00000555557 KRTAP12-3P60328 96 aa3.78□□□□□ -1.81
SRP54-208ENST00000555557 SPRR2FQ96RM1 72 aa3.76□□□□□ -1.81
SRP54-208ENST00000555557 KRTAP20-1Q3LI63 56 aa3.75□□□□□ -1.81
SRP54-208ENST00000555557 MT1EP04732 61 aa3.73□□□□□ -1.81
SRP54-208ENST00000555557 LCE5AQ5TCM9 118 aa3.72□□□□□ -1.81
SRP54-208ENST00000555557 INE1O15225 51 aa3.7□□□□□ -1.82
SRP54-208ENST00000555557 SPRR2EP22531 72 aa3.67□□□□□ -1.82
SRP54-208ENST00000555557 SPRR2BP35325 72 aa3.67□□□□□ -1.82
SRP54-208ENST00000555557 SPRR2AP35326 72 aa3.67□□□□□ -1.82
SRP54-208ENST00000555557 MT1LQ93083 61 aa3.64□□□□□ -1.83
SRP54-208ENST00000555557 KRTAP2-3P0C7H8 128 aa3.62□□□□□ -1.83
SRP54-208ENST00000555557 KRTAP2-4Q9BYR9 128 aa3.62□□□□□ -1.83
SRP54-208ENST00000555557 LCE1AQ5T7P2 110 aa3.6□□□□□ -1.83
SRP54-208ENST00000555557 KRTAP19-3Q7Z4W3 81 aa3.6□□□□□ -1.83
SRP54-208ENST00000555557 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
SRP54-208ENST00000555557 MT1GP13640 62 aa3.55□□□□□ -1.84
SRP54-208ENST00000555557 SPRR2DP22532 72 aa3.54□□□□□ -1.84
SRP54-208ENST00000555557 LCE3CQ5T5A8 94 aa3.52□□□□□ -1.85
SRP54-208ENST00000555557 MT1MQ8N339 61 aa3.52□□□□□ -1.85
SRP54-208ENST00000555557 KRTAP4-3Q9BYR4 195 aa3.5□□□□□ -1.85
SRP54-208ENST00000555557 KRTAP2-2Q9BYT5 123 aa3.5□□□□□ -1.85
SRP54-208ENST00000555557 KRTAP2-1Q9BYU5 128 aa3.5□□□□□ -1.85
SRP54-208ENST00000555557 DSTQ03001 7570 aaKnown RBP3.5□□□□□ -1.85
SRP54-208ENST00000555557 KRTAP9-6A8MVA2 160 aa3.36□□□□□ -1.87
SRP54-208ENST00000555557 GPR98Q8WXG9 6306 aa3.23□□□□□ -1.89
SRP54-208ENST00000555557 KRTAP5-5Q701N2 237 aaPredicted RBP3.18□□□□□ -1.9
SRP54-208ENST00000555557 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.9
SRP54-208ENST00000555557 MT4P47944 62 aa3.13□□□□□ -1.91
SRP54-208ENST00000555557 AHNAK2Q8IVF2 5795 aa3.1□□□□□ -1.91
SRP54-208ENST00000555557 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
SRP54-208ENST00000555557 KRTAP5-4Q6L8H1 288 aa3.08□□□□□ -1.92
SRP54-208ENST00000555557 SYNE1Q8NF91 8797 aaKnown RBP3.07□□□□□ -1.92
SRP54-208ENST00000555557 MT1AP04731 61 aa3.07□□□□□ -1.92
SRP54-208ENST00000555557 KRTAP12-4P60329 112 aa2.97□□□□□ -1.93
SRP54-208ENST00000555557 KRTAP5-10Q6L8G5 202 aa2.94□□□□□ -1.94
SRP54-208ENST00000555557 KRTAP20-2Q3LI61 65 aa2.9□□□□□ -1.95
SRP54-208ENST00000555557 KRTAP6-2Q3LI66 62 aa2.86□□□□□ -1.95
SRP54-208ENST00000555557 KRTAP5-7Q6L8G8 165 aa2.81□□□□□ -1.96
SRP54-208ENST00000555557 MT3P25713 68 aa2.8□□□□□ -1.96
SRP54-208ENST00000555557 KRTAP5-2Q701N4 177 aa2.77□□□□□ -1.97
SRP54-208ENST00000555557 OBSCNQ5VST9 7968 aa2.76□□□□□ -1.97
SRP54-208ENST00000555557 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
SRP54-208ENST00000555557 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
SRP54-208ENST00000555557 KRTAP5-8O75690 187 aa2.56□□□□□ -2
SRP54-208ENST00000555557 AHNAKQ09666 5890 aaKnown RBP2.54□□□□□ -2
SRP54-208ENST00000555557 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
SRP54-208ENST00000555557 LCE3EQ5T5B0 92 aa2.53□□□□□ -2
SRP54-208ENST00000555557 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
SRP54-208ENST00000555557 MUC5ACP98088 5654 aa2.5□□□□□ -2.01
SRP54-208ENST00000555557 PRM1P04553 51 aa2.48□□□□□ -2.01
SRP54-208ENST00000555557 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
SRP54-208ENST00000555557 KRTAP5-1Q6L8H4 278 aa2.44□□□□□ -2.02
SRP54-208ENST00000555557 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.03
SRP54-208ENST00000555557 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
SRP54-208ENST00000555557 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.07
SRP54-208ENST00000555557 LCE1FQ5T754 118 aa2.1□□□□□ -2.07
SRP54-208ENST00000555557 KRTAP21-2Q3LI59 83 aa2.01□□□□□ -2.09
SRP54-208ENST00000555557 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
SRP54-208ENST00000555557 MUC19Q7Z5P9 8384 aa1.66□□□□□ -2.14
SRP54-208ENST00000555557 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
SRP54-208ENST00000555557 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 16.9 ms