RNA–Protein interactions for RNA: ENST00000555046.1

TMEM260-206, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-206ENST00000555046 NISCHQ9Y2I1 1504 aa25.11■■□□□ 1.61
TMEM260-206ENST00000555046 ABCC9O60706 1549 aa23.22■■□□□ 1.31
TMEM260-206ENST00000555046 DNAJC5BQ9UF47 199 aa22.81■■□□□ 1.24
TMEM260-206ENST00000555046 CCDC180Q9P1Z9 1646 aa22.15■■□□□ 1.14
TMEM260-206ENST00000555046 AEBP2Q6ZN18 517 aaPredicted RBP21.78■■□□□ 1.08
TMEM260-206ENST00000555046 DNAJC5Q9H3Z4 198 aa21.77■■□□□ 1.08
TMEM260-206ENST00000555046 RB1CC1Q8TDY2 1594 aa21.58■■□□□ 1.05
TMEM260-206ENST00000555046 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
TMEM260-206ENST00000555046 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
TMEM260-206ENST00000555046 DCAF8L2P0C7V8 631 aa21.17■□□□□ 0.98
TMEM260-206ENST00000555046 NACADO15069 1562 aa21.13■□□□□ 0.97
TMEM260-206ENST00000555046 BICRAQ9NZM4 1560 aa21.09■□□□□ 0.97
TMEM260-206ENST00000555046 CECR2Q9BXF3 1484 aa21.03■□□□□ 0.96
TMEM260-206ENST00000555046 CC2D2AQ9P2K1 1620 aa20.97■□□□□ 0.95
TMEM260-206ENST00000555046 MYO15BQ96JP2 1530 aa20.89■□□□□ 0.94
TMEM260-206ENST00000555046 ZCCHC6Q5VYS8 1495 aaKnown RBP20.89■□□□□ 0.94
TMEM260-206ENST00000555046 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
TMEM260-206ENST00000555046 EIF4G1Q04637 1599 aaKnown RBP20.62■□□□□ 0.89
TMEM260-206ENST00000555046 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
TMEM260-206ENST00000555046 CUX2O14529 1486 aa20.52■□□□□ 0.88
TMEM260-206ENST00000555046 CHIC1Q5VXU3 224 aa20.43■□□□□ 0.86
TMEM260-206ENST00000555046 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
TMEM260-206ENST00000555046 SCRIBQ14160 1630 aa20.21■□□□□ 0.83
TMEM260-206ENST00000555046 ERCC6Q03468 1493 aa20.1■□□□□ 0.81
TMEM260-206ENST00000555046 THOC2Q8NI27 1593 aaKnown RBP19.78■□□□□ 0.76
TMEM260-206ENST00000555046 NESP48681 1621 aa19.64■□□□□ 0.73
TMEM260-206ENST00000555046 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
TMEM260-206ENST00000555046 NCAPD3P42695 1498 aa19.48■□□□□ 0.71
TMEM260-206ENST00000555046 BAZ1AQ9NRL2 1556 aaPredicted RBP19.46■□□□□ 0.71
TMEM260-206ENST00000555046 KIF21AQ7Z4S6 1674 aa19.43■□□□□ 0.7
TMEM260-206ENST00000555046 SMARCA4P51532 1647 aa19.36■□□□□ 0.69
TMEM260-206ENST00000555046 ATAD2BQ9ULI0 1458 aa19.35■□□□□ 0.69
TMEM260-206ENST00000555046 RIMBP3CA6NJZ7 1639 aa19.33■□□□□ 0.69
TMEM260-206ENST00000555046 RIMBP3BA6NNM3 1639 aa19.33■□□□□ 0.69
TMEM260-206ENST00000555046 RIMBP3Q9UFD9 1639 aa19.33■□□□□ 0.69
TMEM260-206ENST00000555046 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
TMEM260-206ENST00000555046 MROH2BQ7Z745 1585 aa19.3■□□□□ 0.68
TMEM260-206ENST00000555046 LAMC3Q9Y6N6 1575 aa19.29■□□□□ 0.68
TMEM260-206ENST00000555046 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
TMEM260-206ENST00000555046 PEG3Q9GZU2 1588 aa19.22■□□□□ 0.67
TMEM260-206ENST00000555046 BAZ1BQ9UIG0 1483 aaKnown RBP19.21■□□□□ 0.67
TMEM260-206ENST00000555046 OSCARQ8IYS5 282 aa19.2■□□□□ 0.66
TMEM260-206ENST00000555046 WDR62O43379 1518 aa19.16■□□□□ 0.66
TMEM260-206ENST00000555046 MRC2Q9UBG0 1479 aa19.12■□□□□ 0.65
TMEM260-206ENST00000555046 PDS5BQ9NTI5 1447 aa19.12■□□□□ 0.65
TMEM260-206ENST00000555046 ARHGEF11O15085 1522 aa19.1■□□□□ 0.65
TMEM260-206ENST00000555046 WIZO95785 1651 aa19.01■□□□□ 0.63
TMEM260-206ENST00000555046 TRHP20396 242 aaPredicted RBP19.01■□□□□ 0.63
TMEM260-206ENST00000555046 SUPT5HO00267 1087 aaKnown RBP18.93■□□□□ 0.62
TMEM260-206ENST00000555046 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
TMEM260-206ENST00000555046 CADPSQ9ULU8 1353 aa18.87■□□□□ 0.61
TMEM260-206ENST00000555046 CYB5RLQ6IPT4 315 aa18.86■□□□□ 0.61
TMEM260-206ENST00000555046 ARAP1Q96P48 1450 aa18.85■□□□□ 0.61
TMEM260-206ENST00000555046 ILDR1Q86SU0 546 aaPredicted RBP18.84■□□□□ 0.61
TMEM260-206ENST00000555046 CEP164Q9UPV0 1460 aa18.78■□□□□ 0.6
TMEM260-206ENST00000555046 SENP3Q9H4L4 574 aaPredicted RBP18.75■□□□□ 0.59
TMEM260-206ENST00000555046 CCDC88BA6NC98 1476 aa18.75■□□□□ 0.59
TMEM260-206ENST00000555046 CFTRP13569 1480 aa18.71■□□□□ 0.59
TMEM260-206ENST00000555046 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
TMEM260-206ENST00000555046 URB2Q14146 1524 aaKnown RBP18.62■□□□□ 0.57
TMEM260-206ENST00000555046 CHD1O14646 1710 aa18.6■□□□□ 0.57
TMEM260-206ENST00000555046 ZNF608Q9ULD9 1512 aaPredicted RBP18.58■□□□□ 0.56
TMEM260-206ENST00000555046 EIF4G3O43432 1585 aaKnown RBP18.48■□□□□ 0.55
TMEM260-206ENST00000555046 IFT140Q96RY7 1462 aa18.44■□□□□ 0.54
TMEM260-206ENST00000555046 PHF23Q9BUL5 403 aaPredicted RBP18.4■□□□□ 0.54
TMEM260-206ENST00000555046 ABCC8Q09428 1581 aa18.38■□□□□ 0.53
TMEM260-206ENST00000555046 CLASP1Q7Z460 1538 aa18.32■□□□□ 0.52
TMEM260-206ENST00000555046 PRDM2Q13029 1718 aa18.28■□□□□ 0.52
TMEM260-206ENST00000555046 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
TMEM260-206ENST00000555046 KIF13AQ9H1H9 1805 aa18.19■□□□□ 0.5
TMEM260-206ENST00000555046 DNMBPQ6XZF7 1577 aa18.19■□□□□ 0.5
TMEM260-206ENST00000555046 AQRO60306 1485 aaKnown RBP eCLIP18.19■□□□□ 0.5
TMEM260-206ENST00000555046 FBLN2P98095 1184 aa18.18■□□□□ 0.5
TMEM260-206ENST00000555046 TARBP1Q13395 1621 aaKnown RBP18.17■□□□□ 0.5
TMEM260-206ENST00000555046 KDM4FA0A1W2PPD8 638 aa18.17■□□□□ 0.5
TMEM260-206ENST00000555046 WRNQ14191 1432 aaPredicted RBP eCLIP18.15■□□□□ 0.5
TMEM260-206ENST00000555046 SOGA1O94964 1423 aa18.14■□□□□ 0.49
TMEM260-206ENST00000555046 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.49
TMEM260-206ENST00000555046 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
TMEM260-206ENST00000555046 CUX1P39880 1505 aa18.09■□□□□ 0.49
TMEM260-206ENST00000555046 POLA1P09884 1462 aaPredicted RBP18.08■□□□□ 0.49
TMEM260-206ENST00000555046 ERCC6L2Q5T890 1561 aa18.08■□□□□ 0.48
TMEM260-206ENST00000555046 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
TMEM260-206ENST00000555046 SNAPC4Q5SXM2 1469 aa18.03■□□□□ 0.48
TMEM260-206ENST00000555046 HECW2Q9P2P5 1572 aa18.02■□□□□ 0.48
TMEM260-206ENST00000555046 RAD54L2Q9Y4B4 1467 aa18.01■□□□□ 0.47
TMEM260-206ENST00000555046 TDRD9Q8NDG6 1382 aaKnown RBP18■□□□□ 0.47
TMEM260-206ENST00000555046 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
TMEM260-206ENST00000555046 ABCA10Q8WWZ4 1543 aa17.93■□□□□ 0.46
TMEM260-206ENST00000555046 KDM6BO15054 1643 aa17.91■□□□□ 0.46
TMEM260-206ENST00000555046 MAGI1Q96QZ7 1491 aaPredicted RBP17.9■□□□□ 0.46
TMEM260-206ENST00000555046 FBXO41Q8TF61 875 aa17.9■□□□□ 0.46
TMEM260-206ENST00000555046 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
TMEM260-206ENST00000555046 BIVM-ERCC5R4GMW8 1640 aa17.9■□□□□ 0.46
TMEM260-206ENST00000555046 LMTK3Q96Q04 1460 aa17.88■□□□□ 0.45
TMEM260-206ENST00000555046 GRIN2BQ13224 1484 aa17.88■□□□□ 0.45
TMEM260-206ENST00000555046 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
TMEM260-206ENST00000555046 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
TMEM260-206ENST00000555046 ADGRL1O94910 1474 aa17.82■□□□□ 0.44
TMEM260-206ENST00000555046 KIF27Q86VH2 1401 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms