RNA–Protein interactions for RNA: ENST00000554913.5

XRCC3-209, Transcript of X-ray repair cross complementing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene XRCC3, Length 2,539 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-209ENST00000554913 NISCHQ9Y2I1 1504 aa33.49■■■□□ 2.95
XRCC3-209ENST00000554913 SHROOM4Q9ULL8 1493 aa28.96■■■□□ 2.23
XRCC3-209ENST00000554913 CCDC180Q9P1Z9 1646 aa28.68■■■□□ 2.18
XRCC3-209ENST00000554913 SUPT5HO00267 1087 aaKnown RBP28.56■■■□□ 2.16
XRCC3-209ENST00000554913 ZCCHC6Q5VYS8 1495 aaKnown RBP28.38■■■□□ 2.13
XRCC3-209ENST00000554913 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
XRCC3-209ENST00000554913 MYO15BQ96JP2 1530 aa27.87■■■□□ 2.05
XRCC3-209ENST00000554913 DCAF8L2P0C7V8 631 aa27.86■■■□□ 2.05
XRCC3-209ENST00000554913 HRCP23327 699 aa27.58■■■□□ 2.01
XRCC3-209ENST00000554913 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
XRCC3-209ENST00000554913 DCAF1Q9Y4B6 1507 aa27.39■■□□□ 1.98
XRCC3-209ENST00000554913 LOC105371045A0A1W2PR82 267 aa27.14■■□□□ 1.94
XRCC3-209ENST00000554913 ABCC9O60706 1549 aa27.11■■□□□ 1.93
XRCC3-209ENST00000554913 PPARGC1BQ86YN6 1023 aaKnown RBP27.05■■□□□ 1.92
XRCC3-209ENST00000554913 SCRIBQ14160 1630 aa26.74■■□□□ 1.87
XRCC3-209ENST00000554913 TRIM26Q12899 539 aaPredicted RBP26.73■■□□□ 1.87
XRCC3-209ENST00000554913 RSF1Q96T23 1441 aaPredicted RBP26.68■■□□□ 1.86
XRCC3-209ENST00000554913 NACADO15069 1562 aa26.66■■□□□ 1.86
XRCC3-209ENST00000554913 TRIM41Q8WV44 630 aa26.52■■□□□ 1.84
XRCC3-209ENST00000554913 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
XRCC3-209ENST00000554913 FAM9AQ8IZU1 332 aaPredicted RBP26.4■■□□□ 1.82
XRCC3-209ENST00000554913 ZEB1P37275 1124 aaPredicted RBP26.23■■□□□ 1.79
XRCC3-209ENST00000554913 EHMT2Q96KQ7 1210 aa26.22■■□□□ 1.79
XRCC3-209ENST00000554913 CECR2Q9BXF3 1484 aa26.19■■□□□ 1.78
XRCC3-209ENST00000554913 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
XRCC3-209ENST00000554913 UNC13AQ9UPW8 1703 aa26.04■■□□□ 1.76
XRCC3-209ENST00000554913 WIZO95785 1651 aa25.97■■□□□ 1.75
XRCC3-209ENST00000554913 PABPN1Q86U42 306 aaKnown RBP eCLIP25.78■■□□□ 1.72
XRCC3-209ENST00000554913 BAZ1AQ9NRL2 1556 aaPredicted RBP25.77■■□□□ 1.72
XRCC3-209ENST00000554913 BICRAQ9NZM4 1560 aa25.74■■□□□ 1.71
XRCC3-209ENST00000554913 EIF4G1Q04637 1599 aaKnown RBP25.72■■□□□ 1.71
XRCC3-209ENST00000554913 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.67■■□□□ 1.7
XRCC3-209ENST00000554913 SCAF1Q9H7N4 1312 aaKnown RBP25.66■■□□□ 1.7
XRCC3-209ENST00000554913 CCER1Q8TC90 406 aaPredicted RBP25.59■■□□□ 1.69
XRCC3-209ENST00000554913 ABCC8Q09428 1581 aa25.55■■□□□ 1.68
XRCC3-209ENST00000554913 SMARCA4P51532 1647 aa25.54■■□□□ 1.68
XRCC3-209ENST00000554913 CCDC88BA6NC98 1476 aa25.53■■□□□ 1.68
XRCC3-209ENST00000554913 TOP2AP11388 1531 aaKnown RBP25.51■■□□□ 1.67
XRCC3-209ENST00000554913 TTBK1Q5TCY1 1321 aaPredicted RBP25.46■■□□□ 1.67
XRCC3-209ENST00000554913 WRNQ14191 1432 aaPredicted RBP eCLIP25.41■■□□□ 1.66
XRCC3-209ENST00000554913 SMARCA2P51531 1590 aa25.41■■□□□ 1.66
XRCC3-209ENST00000554913 SOGA1O94964 1423 aa25.4■■□□□ 1.66
XRCC3-209ENST00000554913 CEP162Q5TB80 1403 aa25.4■■□□□ 1.66
XRCC3-209ENST00000554913 PELP1Q8IZL8 1130 aaKnown RBP25.37■■□□□ 1.65
XRCC3-209ENST00000554913 TNIKQ9UKE5 1360 aa25.31■■□□□ 1.64
XRCC3-209ENST00000554913 RUSC2Q8N2Y8 1516 aa25.27■■□□□ 1.64
XRCC3-209ENST00000554913 CSRNP3Q8WYN3 585 aa25.27■■□□□ 1.64
XRCC3-209ENST00000554913 ACIN1Q9UKV3 1341 aaKnown RBP25.27■■□□□ 1.64
XRCC3-209ENST00000554913 DIEXFQ68CQ4 756 aaKnown RBP25.26■■□□□ 1.63
XRCC3-209ENST00000554913 NEUROD1Q13562 356 aa25.25■■□□□ 1.63
XRCC3-209ENST00000554913 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
XRCC3-209ENST00000554913 EEA1Q15075 1411 aa25.19■■□□□ 1.62
XRCC3-209ENST00000554913 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
XRCC3-209ENST00000554913 GOLGA3Q08378 1498 aa25.09■■□□□ 1.61
XRCC3-209ENST00000554913 ATAD2BQ9ULI0 1458 aa25.05■■□□□ 1.6
XRCC3-209ENST00000554913 CENPBP07199 599 aaPredicted RBP25.03■■□□□ 1.6
XRCC3-209ENST00000554913 GTF3C3Q9Y5Q9 886 aa25.02■■□□□ 1.6
XRCC3-209ENST00000554913 ZNF316A6NFI3 1004 aaPredicted RBP24.97■■□□□ 1.59
XRCC3-209ENST00000554913 CEP164Q9UPV0 1460 aa24.91■■□□□ 1.58
XRCC3-209ENST00000554913 HNRNPUL2Q1KMD3 747 aaKnown RBP24.9■■□□□ 1.58
XRCC3-209ENST00000554913 SYNJ1O43426 1573 aa24.9■■□□□ 1.58
XRCC3-209ENST00000554913 BAZ1BQ9UIG0 1483 aaKnown RBP24.9■■□□□ 1.58
XRCC3-209ENST00000554913 CLIP1P30622 1438 aa24.85■■□□□ 1.57
XRCC3-209ENST00000554913 KIF21BO75037 1637 aa24.84■■□□□ 1.57
XRCC3-209ENST00000554913 VPS8Q8N3P4 1428 aa24.77■■□□□ 1.56
XRCC3-209ENST00000554913 YTHDC1Q96MU7 727 aaKnown RBP24.74■■□□□ 1.55
XRCC3-209ENST00000554913 RAPGEF2Q9Y4G8 1499 aa24.74■■□□□ 1.55
XRCC3-209ENST00000554913 RANGAP1P46060 587 aaPredicted RBP24.72■■□□□ 1.55
XRCC3-209ENST00000554913 MIER1Q8N108 512 aa24.71■■□□□ 1.55
XRCC3-209ENST00000554913 APLP2Q06481 763 aa24.7■■□□□ 1.54
XRCC3-209ENST00000554913 NCAPD3P42695 1498 aa24.69■■□□□ 1.54
XRCC3-209ENST00000554913 HMGXB3Q12766 1538 aa24.62■■□□□ 1.53
XRCC3-209ENST00000554913 TOP2BQ02880 1626 aa24.52■■□□□ 1.52
XRCC3-209ENST00000554913 CC2D2AQ9P2K1 1620 aa24.44■■□□□ 1.5
XRCC3-209ENST00000554913 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
XRCC3-209ENST00000554913 KANK4Q5T7N3 995 aaPredicted RBP24.41■■□□□ 1.5
XRCC3-209ENST00000554913 ARAP1Q96P48 1450 aa24.41■■□□□ 1.5
XRCC3-209ENST00000554913 DHX57Q6P158 1386 aaKnown RBP24.4■■□□□ 1.5
XRCC3-209ENST00000554913 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
XRCC3-209ENST00000554913 ERICH3Q5RHP9 1530 aa24.38■■□□□ 1.49
XRCC3-209ENST00000554913 CLSPNQ9HAW4 1339 aa24.36■■□□□ 1.49
XRCC3-209ENST00000554913 CFTRP13569 1480 aa24.3■■□□□ 1.48
XRCC3-209ENST00000554913 CUX1P39880 1505 aa24.26■■□□□ 1.47
XRCC3-209ENST00000554913 RRBP1Q9P2E9 1410 aaKnown RBP24.23■■□□□ 1.47
XRCC3-209ENST00000554913 KIF27Q86VH2 1401 aa24.22■■□□□ 1.47
XRCC3-209ENST00000554913 ARHGAP35Q9NRY4 1499 aa24.15■■□□□ 1.46
XRCC3-209ENST00000554913 CCNB3Q8WWL7 1395 aa24.14■■□□□ 1.46
XRCC3-209ENST00000554913 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.46
XRCC3-209ENST00000554913 ITGAEP38570 1179 aa24.13■■□□□ 1.45
XRCC3-209ENST00000554913 MYT1Q01538 1121 aa24.12■■□□□ 1.45
XRCC3-209ENST00000554913 CUX2O14529 1486 aa24.12■■□□□ 1.45
XRCC3-209ENST00000554913 DNAJC5BQ9UF47 199 aa24.11■■□□□ 1.45
XRCC3-209ENST00000554913 PRDM2Q13029 1718 aa24.07■■□□□ 1.44
XRCC3-209ENST00000554913 SUPT16HQ9Y5B9 1047 aaKnown RBP24.01■■□□□ 1.43
XRCC3-209ENST00000554913 NESP48681 1621 aa23.99■■□□□ 1.43
XRCC3-209ENST00000554913 RAB3GAP2Q9H2M9 1393 aa23.99■■□□□ 1.43
XRCC3-209ENST00000554913 IGF1RP08069 1367 aa23.97■■□□□ 1.43
XRCC3-209ENST00000554913 MAPKBP1O60336 1514 aa23.93■■□□□ 1.42
XRCC3-209ENST00000554913 TIAM1Q13009 1591 aa23.9■■□□□ 1.42
XRCC3-209ENST00000554913 KCNH8Q96L42 1107 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms