RNA–Protein interactions for RNA: ENST00000552254.5

CDK4-211, Transcript of cyclin dependent kinase 4, humanhuman

TSL 2

Gene CDK4, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-211ENST00000552254 NISCHQ9Y2I1 1504 aa22.23■■□□□ 1.15
CDK4-211ENST00000552254 ABCC9O60706 1549 aa20.32■□□□□ 0.84
CDK4-211ENST00000552254 DNAJC5BQ9UF47 199 aa19.91■□□□□ 0.78
CDK4-211ENST00000552254 CCDC180Q9P1Z9 1646 aa19.87■□□□□ 0.77
CDK4-211ENST00000552254 DNAJC5Q9H3Z4 198 aa19.38■□□□□ 0.69
CDK4-211ENST00000552254 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
CDK4-211ENST00000552254 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
CDK4-211ENST00000552254 NACADO15069 1562 aa18.8■□□□□ 0.6
CDK4-211ENST00000552254 PABPN1Q86U42 306 aaKnown RBP eCLIP18.79■□□□□ 0.6
CDK4-211ENST00000552254 UNC13AQ9UPW8 1703 aa18.69■□□□□ 0.58
CDK4-211ENST00000552254 BICRAQ9NZM4 1560 aa18.47■□□□□ 0.55
CDK4-211ENST00000552254 MYO15BQ96JP2 1530 aa18.47■□□□□ 0.55
CDK4-211ENST00000552254 ZCCHC6Q5VYS8 1495 aaKnown RBP18.45■□□□□ 0.54
CDK4-211ENST00000552254 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
CDK4-211ENST00000552254 CC2D2AQ9P2K1 1620 aa18.32■□□□□ 0.52
CDK4-211ENST00000552254 DCAF1Q9Y4B6 1507 aa18.32■□□□□ 0.52
CDK4-211ENST00000552254 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
CDK4-211ENST00000552254 SCRIBQ14160 1630 aa18.2■□□□□ 0.5
CDK4-211ENST00000552254 EIF4G1Q04637 1599 aaKnown RBP18.13■□□□□ 0.49
CDK4-211ENST00000552254 CUX2O14529 1486 aa17.92■□□□□ 0.46
CDK4-211ENST00000552254 TRIM41Q8WV44 630 aa17.88■□□□□ 0.45
CDK4-211ENST00000552254 ERCC6Q03468 1493 aa17.66■□□□□ 0.42
CDK4-211ENST00000552254 SMARCA4P51532 1647 aa17.33■□□□□ 0.37
CDK4-211ENST00000552254 NCAPD3P42695 1498 aa17.3■□□□□ 0.36
CDK4-211ENST00000552254 ATAD2BQ9ULI0 1458 aa17.3■□□□□ 0.36
CDK4-211ENST00000552254 AEBP2Q6ZN18 517 aaPredicted RBP17.26■□□□□ 0.35
CDK4-211ENST00000552254 NESP48681 1621 aa17.25■□□□□ 0.35
CDK4-211ENST00000552254 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
CDK4-211ENST00000552254 SMARCA2P51531 1590 aa17.23■□□□□ 0.35
CDK4-211ENST00000552254 THOC2Q8NI27 1593 aaKnown RBP17.23■□□□□ 0.35
CDK4-211ENST00000552254 HMGXB3Q12766 1538 aa17.18■□□□□ 0.34
CDK4-211ENST00000552254 MROH2BQ7Z745 1585 aa17.18■□□□□ 0.34
CDK4-211ENST00000552254 BAZ1BQ9UIG0 1483 aaKnown RBP17.14■□□□□ 0.33
CDK4-211ENST00000552254 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
CDK4-211ENST00000552254 KIF21AQ7Z4S6 1674 aa17.1■□□□□ 0.33
CDK4-211ENST00000552254 LAMC3Q9Y6N6 1575 aa17.09■□□□□ 0.33
CDK4-211ENST00000552254 WIZO95785 1651 aa17.01■□□□□ 0.31
CDK4-211ENST00000552254 PDS5BQ9NTI5 1447 aa17■□□□□ 0.31
CDK4-211ENST00000552254 MRC2Q9UBG0 1479 aa16.89■□□□□ 0.29
CDK4-211ENST00000552254 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
CDK4-211ENST00000552254 WDR62O43379 1518 aa16.85■□□□□ 0.29
CDK4-211ENST00000552254 ILDR1Q86SU0 546 aaPredicted RBP16.81■□□□□ 0.28
CDK4-211ENST00000552254 RIMBP3CA6NJZ7 1639 aa16.81■□□□□ 0.28
CDK4-211ENST00000552254 RIMBP3BA6NNM3 1639 aa16.81■□□□□ 0.28
CDK4-211ENST00000552254 RIMBP3Q9UFD9 1639 aa16.81■□□□□ 0.28
CDK4-211ENST00000552254 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
CDK4-211ENST00000552254 OSCARQ8IYS5 282 aa16.79■□□□□ 0.28
CDK4-211ENST00000552254 CEP164Q9UPV0 1460 aa16.74■□□□□ 0.27
CDK4-211ENST00000552254 TOP2AP11388 1531 aaKnown RBP16.73■□□□□ 0.27
CDK4-211ENST00000552254 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
CDK4-211ENST00000552254 FANCD2Q9BXW9 1451 aa16.63■□□□□ 0.25
CDK4-211ENST00000552254 CFTRP13569 1480 aa16.62■□□□□ 0.25
CDK4-211ENST00000552254 ARHGEF11O15085 1522 aa16.57■□□□□ 0.24
CDK4-211ENST00000552254 CCDC88BA6NC98 1476 aa16.56■□□□□ 0.24
CDK4-211ENST00000552254 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
CDK4-211ENST00000552254 URB2Q14146 1524 aaKnown RBP16.5■□□□□ 0.23
CDK4-211ENST00000552254 SUPT5HO00267 1087 aaKnown RBP16.49■□□□□ 0.23
CDK4-211ENST00000552254 CYB5RLQ6IPT4 315 aa16.47■□□□□ 0.23
CDK4-211ENST00000552254 IFT140Q96RY7 1462 aa16.39■□□□□ 0.21
CDK4-211ENST00000552254 ZNF608Q9ULD9 1512 aaPredicted RBP16.39■□□□□ 0.21
CDK4-211ENST00000552254 CHD1O14646 1710 aa16.36■□□□□ 0.21
CDK4-211ENST00000552254 EIF4G3O43432 1585 aaKnown RBP16.35■□□□□ 0.21
CDK4-211ENST00000552254 ARAP1Q96P48 1450 aa16.34■□□□□ 0.21
CDK4-211ENST00000552254 TOPBP1Q92547 1522 aa16.33■□□□□ 0.2
CDK4-211ENST00000552254 FBLN2P98095 1184 aa16.28■□□□□ 0.2
CDK4-211ENST00000552254 DNMBPQ6XZF7 1577 aa16.27■□□□□ 0.2
CDK4-211ENST00000552254 ABCC8Q09428 1581 aa16.24■□□□□ 0.19
CDK4-211ENST00000552254 TARBP1Q13395 1621 aaKnown RBP16.19■□□□□ 0.18
CDK4-211ENST00000552254 AQRO60306 1485 aaKnown RBP eCLIP16.17■□□□□ 0.18
CDK4-211ENST00000552254 POLA1P09884 1462 aaPredicted RBP16.17■□□□□ 0.18
CDK4-211ENST00000552254 RAD54L2Q9Y4B4 1467 aa16.15■□□□□ 0.18
CDK4-211ENST00000552254 CUX1P39880 1505 aa16.12■□□□□ 0.17
CDK4-211ENST00000552254 FGD5Q6ZNL6 1462 aa16.1■□□□□ 0.17
CDK4-211ENST00000552254 SOGA1O94964 1423 aa16.1■□□□□ 0.17
CDK4-211ENST00000552254 SYNJ1O43426 1573 aa16.09■□□□□ 0.17
CDK4-211ENST00000552254 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.16
CDK4-211ENST00000552254 CLASP1Q7Z460 1538 aa16.06■□□□□ 0.16
CDK4-211ENST00000552254 SNAPC4Q5SXM2 1469 aa16.05■□□□□ 0.16
CDK4-211ENST00000552254 CHMP7Q8WUX9 453 aaPredicted RBP16.02■□□□□ 0.16
CDK4-211ENST00000552254 WDR97A6NE52 1622 aa16■□□□□ 0.15
CDK4-211ENST00000552254 GAPVD1Q14C86 1478 aa15.97■□□□□ 0.15
CDK4-211ENST00000552254 ERCC6L2Q5T890 1561 aa15.96■□□□□ 0.15
CDK4-211ENST00000552254 MAGI1Q96QZ7 1491 aaPredicted RBP15.96■□□□□ 0.14
CDK4-211ENST00000552254 LMTK3Q96Q04 1460 aa15.95■□□□□ 0.14
CDK4-211ENST00000552254 PBRM1Q86U86 1689 aa15.94■□□□□ 0.14
CDK4-211ENST00000552254 SYNJ2O15056 1496 aa15.91■□□□□ 0.14
CDK4-211ENST00000552254 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
CDK4-211ENST00000552254 BIVM-ERCC5R4GMW8 1640 aa15.91■□□□□ 0.14
CDK4-211ENST00000552254 WRNQ14191 1432 aaPredicted RBP eCLIP15.9■□□□□ 0.14
CDK4-211ENST00000552254 TOP2BQ02880 1626 aa15.9■□□□□ 0.14
CDK4-211ENST00000552254 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
CDK4-211ENST00000552254 FBXO41Q8TF61 875 aa15.89■□□□□ 0.13
CDK4-211ENST00000552254 ABCA5Q8WWZ7 1642 aa15.88■□□□□ 0.13
CDK4-211ENST00000552254 KDM4FA0A1W2PPD8 638 aa15.87■□□□□ 0.13
CDK4-211ENST00000552254 SOCS7O14512 581 aa15.86■□□□□ 0.13
CDK4-211ENST00000552254 KIF13AQ9H1H9 1805 aa15.8■□□□□ 0.12
CDK4-211ENST00000552254 HECW2Q9P2P5 1572 aa15.78■□□□□ 0.12
CDK4-211ENST00000552254 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
CDK4-211ENST00000552254 GRIN2AQ12879 1464 aa15.73■□□□□ 0.11
CDK4-211ENST00000552254 CEP170Q5SW79 1584 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms