RNA–Protein interactions for RNA: ENST00000551344.1

DDX54-208, Transcript of DEAD-box helicase 54, humanhuman

TSL 5

Gene DDX54, Length 872 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-208ENST00000551344 NISCHQ9Y2I1 1504 aa46.44■■■■■ 5.02
DDX54-208ENST00000551344 CCDC180Q9P1Z9 1646 aa41.32■■■■■ 4.2
DDX54-208ENST00000551344 ABCC9O60706 1549 aa40.74■■■■■ 4.11
DDX54-208ENST00000551344 RB1CC1Q8TDY2 1594 aa39.08■■■■□ 3.85
DDX54-208ENST00000551344 DCAF8L2P0C7V8 631 aa39.01■■■■□ 3.84
DDX54-208ENST00000551344 NACADO15069 1562 aa38.99■■■■□ 3.83
DDX54-208ENST00000551344 MYO15BQ96JP2 1530 aa38.7■■■■□ 3.79
DDX54-208ENST00000551344 ZCCHC6Q5VYS8 1495 aaKnown RBP38.59■■■■□ 3.77
DDX54-208ENST00000551344 DCAF1Q9Y4B6 1507 aa38.42■■■■□ 3.74
DDX54-208ENST00000551344 PABPN1Q86U42 306 aaKnown RBP eCLIP38.09■■■■□ 3.69
DDX54-208ENST00000551344 UNC13AQ9UPW8 1703 aa38.07■■■■□ 3.68
DDX54-208ENST00000551344 BICRAQ9NZM4 1560 aa37.87■■■■□ 3.65
DDX54-208ENST00000551344 DNAJC5BQ9UF47 199 aa37.72■■■■□ 3.63
DDX54-208ENST00000551344 SCRIBQ14160 1630 aa37.66■■■■□ 3.62
DDX54-208ENST00000551344 SHROOM4Q9ULL8 1493 aa37.51■■■■□ 3.59
DDX54-208ENST00000551344 EIF4G1Q04637 1599 aaKnown RBP36.91■■■■□ 3.5
DDX54-208ENST00000551344 CC2D2AQ9P2K1 1620 aa36.81■■■■□ 3.48
DDX54-208ENST00000551344 CECR2Q9BXF3 1484 aa36.66■■■■□ 3.46
DDX54-208ENST00000551344 SMARCA4P51532 1647 aa36.03■■■■□ 3.36
DDX54-208ENST00000551344 NCAPD3P42695 1498 aa36.03■■■■□ 3.36
DDX54-208ENST00000551344 BAZ1AQ9NRL2 1556 aaPredicted RBP35.99■■■■□ 3.35
DDX54-208ENST00000551344 ATAD2BQ9ULI0 1458 aa35.97■■■■□ 3.35
DDX54-208ENST00000551344 SMARCA2P51531 1590 aa35.9■■■■□ 3.34
DDX54-208ENST00000551344 MROH2BQ7Z745 1585 aa35.76■■■■□ 3.31
DDX54-208ENST00000551344 HMGXB3Q12766 1538 aa35.75■■■■□ 3.31
DDX54-208ENST00000551344 PEG3Q9GZU2 1588 aa35.72■■■■□ 3.31
DDX54-208ENST00000551344 BAZ1BQ9UIG0 1483 aaKnown RBP35.64■■■■□ 3.3
DDX54-208ENST00000551344 WIZO95785 1651 aa35.31■■■■□ 3.24
DDX54-208ENST00000551344 RSF1Q96T23 1441 aaPredicted RBP35.3■■■■□ 3.24
DDX54-208ENST00000551344 NESP48681 1621 aa35.16■■■■□ 3.22
DDX54-208ENST00000551344 ERCC6Q03468 1493 aa35.16■■■■□ 3.22
DDX54-208ENST00000551344 LAMC3Q9Y6N6 1575 aa35.05■■■■□ 3.2
DDX54-208ENST00000551344 CADPSQ9ULU8 1353 aa34.98■■■■□ 3.19
DDX54-208ENST00000551344 TOP2AP11388 1531 aaKnown RBP34.95■■■■□ 3.19
DDX54-208ENST00000551344 PDS5BQ9NTI5 1447 aa34.9■■■■□ 3.18
DDX54-208ENST00000551344 CUX2O14529 1486 aa34.9■■■■□ 3.18
DDX54-208ENST00000551344 CFTRP13569 1480 aa34.68■■■■□ 3.14
DDX54-208ENST00000551344 KIF21AQ7Z4S6 1674 aa34.66■■■■□ 3.14
DDX54-208ENST00000551344 THOC2Q8NI27 1593 aaKnown RBP34.63■■■■□ 3.13
DDX54-208ENST00000551344 CCDC88BA6NC98 1476 aa34.59■■■■□ 3.13
DDX54-208ENST00000551344 FANCD2Q9BXW9 1451 aa34.52■■■■□ 3.12
DDX54-208ENST00000551344 MRC2Q9UBG0 1479 aa34.49■■■■□ 3.11
DDX54-208ENST00000551344 CEP164Q9UPV0 1460 aa34.48■■■■□ 3.11
DDX54-208ENST00000551344 WDR62O43379 1518 aa34.36■■■■□ 3.09
DDX54-208ENST00000551344 SUPT5HO00267 1087 aaKnown RBP34.25■■■■□ 3.07
DDX54-208ENST00000551344 PRDM2Q13029 1718 aa34.24■■■■□ 3.07
DDX54-208ENST00000551344 DNAJC5Q9H3Z4 198 aa34.23■■■■□ 3.07
DDX54-208ENST00000551344 URB2Q14146 1524 aaKnown RBP34.16■■■■□ 3.06
DDX54-208ENST00000551344 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
DDX54-208ENST00000551344 TOPBP1Q92547 1522 aa33.92■■■■□ 3.02
DDX54-208ENST00000551344 DNMBPQ6XZF7 1577 aa33.84■■■■□ 3.01
DDX54-208ENST00000551344 IFT140Q96RY7 1462 aa33.81■■■■□ 3
DDX54-208ENST00000551344 ZNF608Q9ULD9 1512 aaPredicted RBP33.63■■■□□ 2.97
DDX54-208ENST00000551344 POLA1P09884 1462 aaPredicted RBP33.62■■■□□ 2.97
DDX54-208ENST00000551344 SOGA1O94964 1423 aa33.54■■■□□ 2.96
DDX54-208ENST00000551344 CUX1P39880 1505 aa33.54■■■□□ 2.96
DDX54-208ENST00000551344 TARBP1Q13395 1621 aaKnown RBP33.53■■■□□ 2.96
DDX54-208ENST00000551344 OSCARQ8IYS5 282 aa33.51■■■□□ 2.95
DDX54-208ENST00000551344 FGD5Q6ZNL6 1462 aa33.49■■■□□ 2.95
DDX54-208ENST00000551344 RAD54L2Q9Y4B4 1467 aa33.48■■■□□ 2.95
DDX54-208ENST00000551344 AQRO60306 1485 aaKnown RBP eCLIP33.45■■■□□ 2.956e-7■■■■■ 35.7
DDX54-208ENST00000551344 EIF4G3O43432 1585 aaKnown RBP33.43■■■□□ 2.94
DDX54-208ENST00000551344 TDRD9Q8NDG6 1382 aaKnown RBP33.37■■■□□ 2.93
DDX54-208ENST00000551344 WRNQ14191 1432 aaPredicted RBP eCLIP33.28■■■□□ 2.92
DDX54-208ENST00000551344 WDR97A6NE52 1622 aa33.28■■■□□ 2.92
DDX54-208ENST00000551344 TOP2BQ02880 1626 aa33.19■■■□□ 2.9
DDX54-208ENST00000551344 ABCA10Q8WWZ4 1543 aa33.18■■■□□ 2.9
DDX54-208ENST00000551344 FBLN2P98095 1184 aa33.16■■■□□ 2.9
DDX54-208ENST00000551344 GRIN2BQ13224 1484 aa33.15■■■□□ 2.9
DDX54-208ENST00000551344 BIVM-ERCC5R4GMW8 1640 aa33.15■■■□□ 2.9
DDX54-208ENST00000551344 SYNJ1O43426 1573 aa33.13■■■□□ 2.89
DDX54-208ENST00000551344 GAPVD1Q14C86 1478 aa33.12■■■□□ 2.89
DDX54-208ENST00000551344 SNAPC4Q5SXM2 1469 aa33.09■■■□□ 2.89
DDX54-208ENST00000551344 MAGI1Q96QZ7 1491 aaPredicted RBP33.07■■■□□ 2.88
DDX54-208ENST00000551344 CHMP7Q8WUX9 453 aaPredicted RBP33.05■■■□□ 2.88
DDX54-208ENST00000551344 CHD1O14646 1710 aa33.03■■■□□ 2.88
DDX54-208ENST00000551344 ABCA5Q8WWZ7 1642 aa32.99■■■□□ 2.87
DDX54-208ENST00000551344 SYNJ2O15056 1496 aa32.95■■■□□ 2.87
DDX54-208ENST00000551344 TRIM41Q8WV44 630 aa32.93■■■□□ 2.86
DDX54-208ENST00000551344 PBRM1Q86U86 1689 aa32.93■■■□□ 2.86
DDX54-208ENST00000551344 ARHGEF11O15085 1522 aa32.82■■■□□ 2.85
DDX54-208ENST00000551344 RIMBP3CA6NJZ7 1639 aa32.82■■■□□ 2.84
DDX54-208ENST00000551344 RIMBP3BA6NNM3 1639 aa32.82■■■□□ 2.84
DDX54-208ENST00000551344 RIMBP3Q9UFD9 1639 aa32.82■■■□□ 2.84
DDX54-208ENST00000551344 ERICH3Q5RHP9 1530 aa32.77■■■□□ 2.84
DDX54-208ENST00000551344 FHAD1B1AJZ9 1412 aa32.74■■■□□ 2.83
DDX54-208ENST00000551344 CLASP1Q7Z460 1538 aa32.73■■■□□ 2.83
DDX54-208ENST00000551344 GRIN2AQ12879 1464 aa32.69■■■□□ 2.82
DDX54-208ENST00000551344 ADAMTS12P58397 1594 aa32.69■■■□□ 2.82
DDX54-208ENST00000551344 CYB5RLQ6IPT4 315 aa32.65■■■□□ 2.82
DDX54-208ENST00000551344 KIF27Q86VH2 1401 aa32.64■■■□□ 2.82
DDX54-208ENST00000551344 NUP160Q12769 1436 aa32.58■■■□□ 2.81
DDX54-208ENST00000551344 IGF1RP08069 1367 aa32.58■■■□□ 2.81
DDX54-208ENST00000551344 ARAP1Q96P48 1450 aa32.54■■■□□ 2.8
DDX54-208ENST00000551344 CEP170Q5SW79 1584 aa32.49■■■□□ 2.79
DDX54-208ENST00000551344 CUL7Q14999 1698 aa32.37■■■□□ 2.77
DDX54-208ENST00000551344 CARMIL1Q5VZK9 1371 aa32.36■■■□□ 2.77
DDX54-208ENST00000551344 JPH4Q96JJ6 628 aa32.34■■■□□ 2.77
DDX54-208ENST00000551344 SHROOM2Q13796 1616 aa32.3■■■□□ 2.76
DDX54-208ENST00000551344 ERCC6L2Q5T890 1561 aa32.24■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms