RNA–Protein interactions for RNA: ENST00000550100.5

LETMD1-221, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 1,480 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-221ENST00000550100 NISCHQ9Y2I1 1504 aa29.12■■■□□ 2.25
LETMD1-221ENST00000550100 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
LETMD1-221ENST00000550100 ABCC9O60706 1549 aa25.63■■□□□ 1.69
LETMD1-221ENST00000550100 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
LETMD1-221ENST00000550100 RB1CC1Q8TDY2 1594 aa24.45■■□□□ 1.5
LETMD1-221ENST00000550100 NACADO15069 1562 aa24.39■■□□□ 1.49
LETMD1-221ENST00000550100 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.46
LETMD1-221ENST00000550100 MYO15BQ96JP2 1530 aa24.16■■□□□ 1.46
LETMD1-221ENST00000550100 DCAF1Q9Y4B6 1507 aa24.01■■□□□ 1.43
LETMD1-221ENST00000550100 PABPN1Q86U42 306 aaKnown RBP eCLIP24■■□□□ 1.43
LETMD1-221ENST00000550100 UNC13AQ9UPW8 1703 aa24■■□□□ 1.43
LETMD1-221ENST00000550100 DNAJC5BQ9UF47 199 aa23.87■■□□□ 1.41
LETMD1-221ENST00000550100 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
LETMD1-221ENST00000550100 SCRIBQ14160 1630 aa23.68■■□□□ 1.38
LETMD1-221ENST00000550100 SHROOM4Q9ULL8 1493 aa23.37■■□□□ 1.33
LETMD1-221ENST00000550100 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
LETMD1-221ENST00000550100 CC2D2AQ9P2K1 1620 aa23.15■■□□□ 1.3
LETMD1-221ENST00000550100 CECR2Q9BXF3 1484 aa23.01■■□□□ 1.27
LETMD1-221ENST00000550100 SMARCA4P51532 1647 aa22.61■■□□□ 1.21
LETMD1-221ENST00000550100 NCAPD3P42695 1498 aa22.57■■□□□ 1.2
LETMD1-221ENST00000550100 ATAD2BQ9ULI0 1458 aa22.57■■□□□ 1.2
LETMD1-221ENST00000550100 BAZ1AQ9NRL2 1556 aaPredicted RBP22.51■■□□□ 1.19
LETMD1-221ENST00000550100 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
LETMD1-221ENST00000550100 SMARCA2P51531 1590 aa22.44■■□□□ 1.18
LETMD1-221ENST00000550100 HMGXB3Q12766 1538 aa22.37■■□□□ 1.17
LETMD1-221ENST00000550100 PEG3Q9GZU2 1588 aa22.37■■□□□ 1.17
LETMD1-221ENST00000550100 BAZ1BQ9UIG0 1483 aaKnown RBP22.32■■□□□ 1.16
LETMD1-221ENST00000550100 WIZO95785 1651 aa22.23■■□□□ 1.15
LETMD1-221ENST00000550100 NESP48681 1621 aa22.18■■□□□ 1.14
LETMD1-221ENST00000550100 RSF1Q96T23 1441 aaPredicted RBP22.17■■□□□ 1.14
LETMD1-221ENST00000550100 ERCC6Q03468 1493 aa22.01■■□□□ 1.11
LETMD1-221ENST00000550100 LAMC3Q9Y6N6 1575 aa21.93■■□□□ 1.1
LETMD1-221ENST00000550100 CADPSQ9ULU8 1353 aa21.91■■□□□ 1.1
LETMD1-221ENST00000550100 TOP2AP11388 1531 aaKnown RBP21.91■■□□□ 1.1
LETMD1-221ENST00000550100 CUX2O14529 1486 aa21.83■■□□□ 1.09
LETMD1-221ENST00000550100 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.08
LETMD1-221ENST00000550100 PDS5BQ9NTI5 1447 aa21.8■■□□□ 1.08
LETMD1-221ENST00000550100 THOC2Q8NI27 1593 aaKnown RBP21.78■■□□□ 1.08
LETMD1-221ENST00000550100 CCDC88BA6NC98 1476 aa21.74■■□□□ 1.07
LETMD1-221ENST00000550100 CFTRP13569 1480 aa21.74■■□□□ 1.07
LETMD1-221ENST00000550100 FANCD2Q9BXW9 1451 aa21.65■■□□□ 1.06
LETMD1-221ENST00000550100 MRC2Q9UBG0 1479 aa21.62■■□□□ 1.05
LETMD1-221ENST00000550100 CEP164Q9UPV0 1460 aa21.59■■□□□ 1.05
LETMD1-221ENST00000550100 WDR62O43379 1518 aa21.56■■□□□ 1.04
LETMD1-221ENST00000550100 DNAJC5Q9H3Z4 198 aa21.52■■□□□ 1.03
LETMD1-221ENST00000550100 URB2Q14146 1524 aaKnown RBP21.49■■□□□ 1.03
LETMD1-221ENST00000550100 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
LETMD1-221ENST00000550100 PRDM2Q13029 1718 aa21.46■■□□□ 1.03
LETMD1-221ENST00000550100 TOPBP1Q92547 1522 aa21.29■■□□□ 1
LETMD1-221ENST00000550100 DNMBPQ6XZF7 1577 aa21.2■□□□□ 0.98
LETMD1-221ENST00000550100 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
LETMD1-221ENST00000550100 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
LETMD1-221ENST00000550100 IFT140Q96RY7 1462 aa21.15■□□□□ 0.98
LETMD1-221ENST00000550100 CUX1P39880 1505 aa21.1■□□□□ 0.97
LETMD1-221ENST00000550100 POLA1P09884 1462 aaPredicted RBP21.1■□□□□ 0.97
LETMD1-221ENST00000550100 TARBP1Q13395 1621 aaKnown RBP21.09■□□□□ 0.97
LETMD1-221ENST00000550100 RAD54L2Q9Y4B4 1467 aa21.08■□□□□ 0.96
LETMD1-221ENST00000550100 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.961e-6■■□□□ 12.7
LETMD1-221ENST00000550100 FGD5Q6ZNL6 1462 aa21.02■□□□□ 0.96
LETMD1-221ENST00000550100 SOGA1O94964 1423 aa21.01■□□□□ 0.95
LETMD1-221ENST00000550100 EIF4G3O43432 1585 aaKnown RBP21■□□□□ 0.95
LETMD1-221ENST00000550100 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
LETMD1-221ENST00000550100 OSCARQ8IYS5 282 aa20.96■□□□□ 0.95
LETMD1-221ENST00000550100 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
LETMD1-221ENST00000550100 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.92
LETMD1-221ENST00000550100 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
LETMD1-221ENST00000550100 TOP2BQ02880 1626 aa20.8■□□□□ 0.92
LETMD1-221ENST00000550100 CHD1O14646 1710 aa20.79■□□□□ 0.92
LETMD1-221ENST00000550100 FBLN2P98095 1184 aa20.79■□□□□ 0.92
LETMD1-221ENST00000550100 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
LETMD1-221ENST00000550100 SNAPC4Q5SXM2 1469 aa20.78■□□□□ 0.92
LETMD1-221ENST00000550100 ABCA10Q8WWZ4 1543 aa20.78■□□□□ 0.92
LETMD1-221ENST00000550100 GRIN2BQ13224 1484 aa20.74■□□□□ 0.91
LETMD1-221ENST00000550100 GAPVD1Q14C86 1478 aa20.74■□□□□ 0.91
LETMD1-221ENST00000550100 TRIM41Q8WV44 630 aa20.73■□□□□ 0.91
LETMD1-221ENST00000550100 ABCA5Q8WWZ7 1642 aa20.72■□□□□ 0.91
LETMD1-221ENST00000550100 MAGI1Q96QZ7 1491 aaPredicted RBP20.68■□□□□ 0.9
LETMD1-221ENST00000550100 PBRM1Q86U86 1689 aa20.68■□□□□ 0.9
LETMD1-221ENST00000550100 CHMP7Q8WUX9 453 aaPredicted RBP20.67■□□□□ 0.9
LETMD1-221ENST00000550100 RIMBP3CA6NJZ7 1639 aa20.65■□□□□ 0.9
LETMD1-221ENST00000550100 RIMBP3BA6NNM3 1639 aa20.65■□□□□ 0.9
LETMD1-221ENST00000550100 RIMBP3Q9UFD9 1639 aa20.65■□□□□ 0.9
LETMD1-221ENST00000550100 SYNJ2O15056 1496 aa20.63■□□□□ 0.89
LETMD1-221ENST00000550100 ARHGEF11O15085 1522 aa20.63■□□□□ 0.89
LETMD1-221ENST00000550100 CLASP1Q7Z460 1538 aa20.57■□□□□ 0.88
LETMD1-221ENST00000550100 ADAMTS12P58397 1594 aa20.52■□□□□ 0.88
LETMD1-221ENST00000550100 CYB5RLQ6IPT4 315 aa20.5■□□□□ 0.87
LETMD1-221ENST00000550100 ERICH3Q5RHP9 1530 aa20.5■□□□□ 0.87
LETMD1-221ENST00000550100 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
LETMD1-221ENST00000550100 ARAP1Q96P48 1450 aa20.48■□□□□ 0.87
LETMD1-221ENST00000550100 FHAD1B1AJZ9 1412 aa20.48■□□□□ 0.87
LETMD1-221ENST00000550100 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
LETMD1-221ENST00000550100 IGF1RP08069 1367 aa20.44■□□□□ 0.86
LETMD1-221ENST00000550100 NUP160Q12769 1436 aa20.43■□□□□ 0.86
LETMD1-221ENST00000550100 KIF27Q86VH2 1401 aa20.38■□□□□ 0.85
LETMD1-221ENST00000550100 ERCC6L2Q5T890 1561 aa20.37■□□□□ 0.85
LETMD1-221ENST00000550100 RUSC2Q8N2Y8 1516 aa20.32■□□□□ 0.84
LETMD1-221ENST00000550100 SHROOM2Q13796 1616 aa20.28■□□□□ 0.84
LETMD1-221ENST00000550100 CARMIL1Q5VZK9 1371 aa20.25■□□□□ 0.83
LETMD1-221ENST00000550100 JPH4Q96JJ6 628 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms